 |
Job Description | P39453 | Confidence | 63.68% | Date | Thu Jan 5 12:00:52 GMT 2012 |
Rank | 306 | Aligned Residues | 75 |
% Identity | 9% | Template | d2b2ca1 |
SCOP info | S-adenosyl-L-methionine-dependent methyltransferases
| S-adenosyl-L-methionine-dependent methyltransferases
| Spermidine synthase
|
Resolution | 2.50 |
|
 |
  |   |
678 | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | D | G | L | R | L | L | L | I | E | D | N | P | L | T | Q | R | I | T | I | E | M | L | K | T | S | G | A | Q | I | . |
. |
. |
. |
. |
. |
V | A | V | G | N | A | A | Q | A | L | E | T | L | Q | N | S | E | P | F | A | A | A | L | V | D | F | D | L | P | D | I | D | G | I | T | L | A | R | Q | L | A | Q | Q |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
| . | . | . | . | . | . |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |
|
|   |   |   |
|   | . | . |   |   |   |   |   |
|
|   |
|
|   |
|   | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |
Template Sequence |   |
H | E | S | V | E | K | V | T | M | C | E | I | D | E | M | V | I | D | V | A | K | K | F | L | P | G | M | S | C | G | F | S | H | P | K | L | D | L | F | C | G | D | G | F | E | F | L | K | . |
. |
N | H | K | N | E | F | D | V | I | I | T | D | S | . |
. |
. |
. |
. |
. |
. |
. |
S | Y | Y | E | L | L | R | D | A |
Template Known Secondary structure |   |
| T | T |
|
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
| T | T | T | S | G | G | G | G |
| T | T |  |  |  |  |
| S |
|  |  |  |  |  |  | . | . |  |
| T | T |
|  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | . | . |
|
|
|
|
|
|
|  |  |  |  |
|  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
. | . | . | 180 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
190 | . | . | . | . | . | . | . | . |
  |
  |   |
752 | . | . | . | . | . | . | . | 760 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | P | S | L | V | L | I | G | F | S | A |
Query Conservation |   |
  |   |   |   |
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |
|   |
|   |
Template Sequence |   |
L | K | E | D | G | I | L | S | S | Q | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|