Job Description P39453 Confidence 50.96% Date Thu Jan 5 12:00:52 GMT 2012 Rank 365 Aligned Residues 189 % Identity 12% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.				.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.								.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.																										.	.	.	.	.	.	.
Query SS confidence																																					.	.	.																										.	.	.	.	.	.	.
Query Sequence		D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I	D	P	A	K	L	A	E	I	F	Q	P	F	V	Q	V	S	G	K	R	.	.	.	G	G	T	G	L	G	L	T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	.	.	.	.	.	.	.	T	P	E	V	G	S	C	F	C	L
Query Conservation																																					.	.	.																										.	.	.	.	.	.	.
Alig confidence																.	.																				.	.	.																										.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		N	G	K	P	I	E	V	V	Y	A	D	H	Q	N	.	.	K	A	D	I	A	A	S	K	A	R	E	W	X	D	R	G	G	L	D	L	L	V	G	G	T	N	S	A	T	A	L	S	X	N	Q	V	A	A	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V
Template Known Secondary structure		T	T											T	T	.	.																S									S																T							S				G	G	G	G	T	T	T			T	T
Template Predicted Secondary structure																.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.				.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710								.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.																	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.																	.	.	.	.	.	.	.
Query Sequence		R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	E	D	N	P	L	T	Q	.	.	.	R	I	T	I	E	M	L	K	T	S	G	A	Q	I	V	A	.	.	.	.	.	.	.	V	G	N	A	A	Q	A	L	E	T	L	Q	N	S	E	P	F	A
Query Conservation																																						.	.	.																	.	.	.	.	.	.	.
Alig confidence																																						.	.	.																	.	.	.	.	.	.	.																	.
Template Conservation																																																																																.
Template Sequence		H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	T	W	F	F	L	T	A	D	Y	A	F	G	K	A	L	E	K	N	T	A	D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	S	S	F	L	L	Q	A	Q	S	S	K	A	.	Q
Template Known Secondary structure				S																	T	T										S	S																	T	T											T	T		S												T			.	S
Template Predicted Secondary structure																																																																																.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	V	D	F	D	L	P	D	I	D	G	I	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S	S	L	F	R	G	I	I	P
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		I	L	G	L	.	.	A	N	A	G	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	K	T	X	K	L	A	A	L	L	X	F	I	N	D	V	H	A	L	G	L	E	T	T	Q	G	L	V	L
Template Known Secondary structure						.	.																	T	T	G	G	G	T						S	S															T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		221	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions