Job Description P39453 Confidence 77.45% Date Thu Jan 5 12:00:52 GMT 2012 Rank 259 Aligned Residues 111 % Identity 11% Template c3fwzA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli Resolution 1.79 Å

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		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.																					.	.	.	730	.	.	.	.	.	.	.	.		.	740	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		R	L	L	L	I	E	D	N	P	L	T	Q	R	I	T	I	E	M	L	K	T	S	G	A	Q	I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	N	S	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	A	A	L	V	D	F	D	L	P	D	.	I	D	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.						.
Template Conservation																							.																																																.	.
Template Sequence		H	A	L	L	V	G	Y	G	R	V	G	S	L	L	G	E	K	L	L	A	S	.	D	I	P	L	V	V	I	E	T	S	R	T	R	V	D	E	L	R	E	R	G	V	R	A	V	L	G	N	A	A	N	E	E	I	X	Q	L	A	H	L	E	C	A	K	W	L	I	.	.	L	T	I	P	N	G	Y	E	A
Template Known Secondary structure									S													T	.	T								S											T	T						S		T	T	S							T	T	G	G	G		S				.	.				S
Template Predicted Secondary structure																							.																																																.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.			.	.	.	490	.	.	.	.	.
		742	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S	S	L	F	R	G	I	I	P	K	P	V	P	R	E	V	L	G	Q	L	L	A	H	Y	L	Q	L	Q
Query Conservation
Alig confidence																								.	.																	.	.	.
Template Conservation																								.	.																	.	.	.
Template Sequence		G	E	I	V	A	S	A	R	A	K	N	P	D	I	E	I	I	A	R	A	H	Y	.	.	D	D	E	V	A	Y	I	T	E	R	G	A	N	Q	V	V	.	.	.	X	G	E	R	E	I	A	R	T	X	L	E	L	L	E	T	P
Template Known Secondary structure													S	S	S							S	S	.	.										T	T		S				.	.	.
Template Predicted Secondary structure																								.	.																	.	.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.			.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.				.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions