Job Description P39453 Confidence 100.00% Date Thu Jan 5 12:00:52 GMT 2012 Rank 3 Aligned Residues 257 % Identity 16% Template c3d2rB_ PDB info PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp Resolution 2.03 Å

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		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470								.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		V	K	A	R	T	A	E	L	Q	E	L	V	I	E	H	R	Q	A	R	A	E	A	E	K	A	S	Q	A	K	S	A	F	L	A	A	M	S	H	E	I	R	T	P	L	Y	G	I	L	G	T	A	Q	L	L	A	.	.	.	.	.	.	.	D	N	P	A	L	N	A	Q	R	D	D	L	R	A	I	T	D	S
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	L	V	K	S	W	Y	I	Q	S	L	M	D	L	V	E	F	H	E	K	S	P	D	D	Q	K	A	L	S	D	F	V	D	T	L	I	K	V	R	N	R	H	H	N	V	V	P	T	M	A	Q	G	I	I	E	Y	K	A	C	T	V	D	P	V	T	N	Q	N	L	Q	Y	F	L	D	R	F	Y	M	N
Template Known Secondary structure																		G	G	G	G	S		T	T																			T	T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.			.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.								.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																							.	.	.	.	.	.	.
Query SS confidence																													.	.																							.	.	.	.	.	.	.
Query Sequence		G	E	S	L	L	T	I	L	N	D	I	L	D	Y	S	A	I	E	A	G	G	K	N	V	S	V	S	.	.	D	E	P	F	E	P	R	P	L	L	E	S	T	L	Q	L	M	S	G	R	V	K	.	.	.	.	.	.	.	G	R	P	I	R	L	A	T	A	I	A	D	D	M	P	C	A	L	M	G	D	P
Query Conservation																													.	.																							.	.	.	.	.	.	.
Alig confidence																													.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	S	T	R	M	L	M	N	Q	H	I	L	I	F	S	D	S	Q	T	G	N	P	S	H	I	G	S	I	D	P	N	C	D	V	V	A	V	V	Q	D	A	F	E	C	S	R	M	L	C	D	Q	Y	Y	L	S	S	P	E	L	K	L	T	Q	V	N	G	K	F	P	D	Q	P	I	H	I	V	Y	V	P
Template Known Secondary structure																		S	S					T	T	S	B	T	T	B																										S												S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.									.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.			.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																																																.	.
Query SS confidence																				.	.	.	.	.	.	.	.																																																.	.
Query Sequence		R	R	I	R	Q	V	I	T	N	L	L	S	N	A	L	R	F	T	.	.	.	.	.	.	.	.	D	E	G	Y	I	I	L	R	S	R	T	D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I	D	P	A	K	L	A	E	I	F	Q	P	F	V	Q	V	S	G	K	R	G	.	.	G	T	G	L	G
Query Conservation																				.	.	.	.	.	.	.	.																																																.	.
Alig confidence																				.	.	.	.	.	.	.	.																																																.	.
Template Conservation
Template Sequence		S	H	L	H	H	M	L	F	E	L	F	K	N	A	M	R	A	T	V	E	H	Q	E	N	Q	P	S	L	T	P	I	E	V	I	V	V	L	G	K	E	D	L	T	I	K	I	S	D	R	G	G	G	V	P	L	R	I	I	D	R	L	F	S	Y	T	Y	S	T	A	P	T	P	P	L	A	G	F	G	Y	G
Template Known Secondary structure																							T	T	T	S	S	S												S	S										S					G	G	G	T	T	G	G	G	S	T	T			S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	I	S	R	L	Y	A	K	Y	F	Q	G	D	L	N	L	Y	S	L	S	G	Y	G	T	D	A	I	I	Y	L	K	A	L	S	S	E	S	I	E	K	L	P
Template Known Secondary structure												T	T									T	T	T										S	S	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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