 |
Job Description | P39453 | Confidence | 40.98% | Date | Thu Jan 5 12:00:52 GMT 2012 |
Rank | 417 | Aligned Residues | 104 |
% Identity | 8% | Template | c3bicA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; |
PDBTitle: crystal structure of human methylmalonyl-coa mutase
|
Resolution | 2.60 Å |
|
 |
  |   |
694 | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | |
|
|
710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | |
|
740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | R | I | T | I | E | M | L | K | T | S | G | A | Q | I | V | . |
. |
. |
A | V | G | N | A | A | Q | A | L | E | T | L | Q | N | S | E | P | F | A | A | A | L | V | D | F | D | L | P | D | I | . |
. |
D | G | I | T | L | A | R | Q | L | A | Q | Q | Y | P | S | L | V | L | I | G | F | S | A | H | V | I | D | E | T |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   | . | . | . |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |
|
|   |
| . | . |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|   |   |   |
|
|
| . |   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |
|   |
|
|
|   |   |
|   |
|   |
Template Sequence |   |
A | K | V | I | A | T | G | F | A | D | L | G | F | D | V | D | I | G | P | L | F | Q | T | P | R | E | V | A | Q | Q | A | V | D | A | D | V | . |
H | A | V | G | V | S | T | L | A | A | G | H | K | T | L | V | P | E | L | I | K | E | L | N | S | L | G | R | P | D | I | L | V | M | C | G | G | V | I | P | P | Q | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
|
| T | T | B |
|  |  |  |  |  |  |  |  |  |  |  | T |
| . | S |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T | S |  |  |  |  |  |  | S |
|
| G | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
631 | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | |
. | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . |
  |
  |   |
769 | 770 | . | . | . | . | . | . | . | . | . | 780 | . | |
|
|
|
. | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | R | Q | R | T | S | S | L | F | R | G | I | I | . |
. |
. |
. |
P | K | P | V | P | R | E | V | L | G | Q | L | L | A | H | Y | L |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |
| . | . | . | . |   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|
|
|   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
Y | E | F | L | F | E | V | G | V | S | N | V | F | G | P | G | T | R | I | P | K | A | A | V | Q | V | L | D | D | I | E | K | C | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
|
|  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|