Job Description P39453 Confidence 99.66% Date Thu Jan 5 12:00:52 GMT 2012 Rank 133 Aligned Residues 248 % Identity 15% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580							.	.	.	.	.	.	.	.		.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620					.	.	.	.	.	.		.	.	.
Predicted Secondary structure																					.	.	.	.	.	.									.																																	.	.	.	.							.
Query SS confidence																					.	.	.	.	.	.									.																																	.	.	.	.							.
Query Sequence		I	R	Q	V	I	T	N	L	L	S	N	A	L	R	F	T	D	E	G	.	.	.	.	.	.	Y	I	I	L	R	S	R	T	.	D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I	D	P	A	K	L	A	E	I	F	Q	P	F	V	Q	V	S	.	.	.	.	G	K	R	G	G	T	.	G	L	G
Query Conservation																					.	.	.	.	.	.									.																																	.	.	.	.							.
Alig confidence																					.	.	.	.	.	.									.																																	.	.	.	.							.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y	G	L	G
Template Known Secondary structure															T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.		.	.	.	.	.	.	650		.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.							.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure																.								.																																	.	.	.	.	.	.
Query SS confidence																.								.																																	.	.	.	.	.	.
Query Sequence		L	T	I	S	S	R	L	A	Q	A	M	G	G	E	.	L	S	A	T	S	T	P	.	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	.	.	.	.	.	.	R	L	L	L	I	E	D	N	P	L	T	Q	R	I	T	I	E	M	L
Query Conservation																.								.																																	.	.	.	.	.	.
Alig confidence																.								.																																	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I
Template Known Secondary structure																								T	T		S											T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		702	.	.						.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.			.	.	.	.	.	750			.	.	.	.	.	.	.	.	.	760	.	.					.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																									.	.							.	.													.	.	.	.
Query SS confidence					.	.	.	.	.																																									.	.							.	.													.	.	.	.
Query Sequence		K	T	S	.	.	.	.	.	G	A	Q	I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	N	S	E	P	F	A	A	A	L	V	D	F	D	L	P	D	I	D	G	I	T	L	.	.	A	R	Q	L	A	Q	.	.	Q	Y	P	S	L	V	L	I	G	F	S	A	.	.	.	.	H	V	I	D	E	T
Query Conservation					.	.	.	.	.																																									.	.							.	.													.	.	.	.
Alig confidence					.	.	.	.	.																.																									.	.							.	.													.	.	.	.
Template Conservation																									.
Template Sequence		K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	.	Y	P	R	L	T	N	K	I	P	K	P	P	Q	E	V	K	P	H	P	Y	G	V	D	R	E	E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I	K	E	F	L	V	N	E	F	Q	S	I	G	D	T	T	A
Template Known Secondary structure									T	T								T	T	S					.																			G	G	G											T	T		S	S			B							T	T	S	T	T
Template Predicted Secondary structure																									.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		769	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		L	R	Q	R	T	S	S	L	F	R	.	G	I	I	P	K	P	V	P	R	E	V	L	G	Q	L	L	A	H	Y	L	Q	L	Q	V	N	N	D	Q	S	L	D	V
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		D	K	I	L	E	L	A	G	L	K	P	N	K	K	V	K	N	L	T	E	E	E	I	T	R	L	V	E	T	F	K	K	D	E	D	F	R	S	P	S	A	D	S
Template Known Secondary structure								T	T			S	S		B	S	S																									S	T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions