Job Description P39453 Confidence 57.75% Date Thu Jan 5 12:00:52 GMT 2012 Rank 332 Aligned Residues 144 % Identity 11% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690				.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																	.																																														.	.	.
Query SS confidence																	.																																														.	.	.
Query Sequence		T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	.	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	E	D	N	.	.	.	P	L	T	Q	R	I	T	I	E	M	L	K	T	S	G	A
Query Conservation																	.																																														.	.	.
Alig confidence																	.																																														.	.	.
Template Conservation
Template Sequence		I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V
Template Known Secondary structure														S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		707	.	.	710	.	.	.	.	.	.						.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.					.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																									.	.	.	.
Query SS confidence												.	.	.	.	.																																									.	.	.	.
Query Sequence		Q	I	V	A	V	G	N	A	A	Q	.	.	.	.	.	A	L	E	T	L	Q	N	S	E	P	F	A	A	A	L	V	D	F	D	L	P	D	I	D	G	I	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	.	.	.	.	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S
Query Conservation												.	.	.	.	.																																									.	.	.	.
Alig confidence												.	.	.	.	.																																									.	.	.	.
Template Conservation
Template Sequence		P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A
Template Known Secondary structure							S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions