Job Description P39453 Confidence 51.46% Date Thu Jan 5 12:00:52 GMT 2012 Rank 361 Aligned Residues 152 % Identity 16% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.				.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		L	T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	E	D	N	P	.	.	.	L	T	Q	R	I	T	I	E	M	L	K	T	S	G	A
Query Conservation																																																																.	.	.
Alig confidence																																																																.	.	.
Template Conservation
Template Sequence		L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V
Template Known Secondary structure													T	T	S	S								S	S								S	T	T	S	S														T	T	T											S	S	T	T													T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.							.	.	.	.	.	.	730	.	.	.	.	.			.	.	.	.	740	.	.			.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.													.	.								.	.																																	.	.
Query SS confidence																			.	.	.	.	.	.													.	.								.	.																																	.	.
Query Sequence		Q	I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	N	.	.	.	.	.	.	S	E	P	F	A	A	A	L	V	D	F	D	.	.	L	P	D	I	D	G	I	.	.	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S	.	.
Query Conservation																			.	.	.	.	.	.													.	.								.	.																																	.	.
Alig confidence																			.	.	.	.	.	.													.	.								.	.																																	.	.
Template Conservation
Template Sequence		P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D
Template Known Secondary structure								T	T																	T	T													T	T																		S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
				775	.	.	.	.	780	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	L	F	R	G	I	I
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		E	K	V	G	V	T	G	L	V
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions