Job Description P39453 Confidence 41.66% Date Thu Jan 5 12:00:52 GMT 2012 Rank 416 Aligned Residues 144 % Identity 10% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		631	.	.	.	.	.	.	.	.	640	.		.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680		.	.	.	.	.	.	.	.	.	690				.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure													.																																								.											.	.	.
Query SS confidence													.																																								.											.	.	.
Query Sequence		T	I	S	S	R	L	A	Q	A	M	G	.	G	E	L	S	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	.	G	L	R	L	L	L	I	E	D	N	.	.	.	P	L	T	Q	R	I	T	I	E	M	L	K	T	S	G
Query Conservation													.																																								.											.	.	.
Alig confidence													.																																								.											.	.	.
Template Conservation
Template Sequence		I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G
Template Known Secondary structure											T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.							.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750					.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																													.	.	.	.
Query SS confidence																			.	.	.	.	.	.																													.	.	.	.
Query Sequence		A	Q	I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	.	.	.	.	.	.	N	S	E	P	F	A	A	A	L	V	D	F	D	L	P	D	I	D	G	I	T	L	A	R	Q	L	A	Q	.	.	.	.	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S
Query Conservation																			.	.	.	.	.	.																													.	.	.	.
Alig confidence																			.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A
Template Known Secondary structure								S	S				T	T													T	T		S											S	S																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions