Job Description P39453 Confidence 54.32% Date Thu Jan 5 12:00:52 GMT 2012 Rank 349 Aligned Residues 150 % Identity 20% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.				.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	.	.	.	E	D	N	P	L	T	Q	R	I	T	I	E	M	L	K	T	S	G	A	Q
Query Conservation																																																											.	.	.
Alig confidence															.																																												.	.	.
Template Conservation															.
Template Sequence		T	V	Y	E	A	L	K	E	A	L	G	G	E	.	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P
Template Known Secondary structure											T	T	S	S	.								S	S									T	T	S	S															T	T										S	S																T
Template Predicted Secondary structure															.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.							.	.	.	.	.	.	730	.	.	.		.	.	.	.	.	.	740	.				.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.											.									.	.	.																																		.	.	.
Query SS confidence																		.	.	.	.	.	.											.									.	.	.																																		.	.	.
Query Sequence		I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	N	.	.	.	.	.	.	S	E	P	F	A	A	A	L	V	D	.	F	D	L	P	D	I	D	G	.	.	.	I	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T	S	.	.	.
Query Conservation																		.	.	.	.	.	.											.									.	.	.																																		.	.	.
Alig confidence																		.	.	.	.	.	.											.									.	.	.																																		.	.	.
Template Conservation
Template Sequence		V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E
Template Known Secondary structure							T	T																		T		S										S	S																			S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
			775	.	.	.	.	780	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	L	F	R	G	I	I
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		K	V	G	V	T	G	L	V
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions