 |
Job Description | P39453 | Confidence | 45.68% | Date | Thu Jan 5 12:00:52 GMT 2012 |
Rank | 396 | Aligned Residues | 93 |
% Identity | 9% | Template | c2htmB_ |
PDB info |
PDB header:biosynthetic protein | Chain: B: PDB Molecule:thiazole biosynthesis protein thig; |
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
|
Resolution | 2.30 Å |
|
 |
  |   |
689 | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | |
710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | N | P | L | T | Q | R | I | T | I | E | M | L | K | T | S | G | A | Q | I | V | . |
A | V | G | N | A | A | Q | A | L | E | T | L | Q | N | S | E | P | F | A | A | A | L | V | D | . |
. |
. |
. |
. |
F | D | L | P | D | I | D | G | I | T | L | A | R | Q | L | A | Q | Q | Y | P | S | L | V | L | I | G | F | S | A |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   | . |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
| . | . | . | . | . |   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
| . |
|   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|
Template Sequence |   |
P | D | P | L | E | T | L | K | A | A | E | R | L | I | E | E | D | F | L | V | L | P | Y | M | G | P | D | L | V | L | A | K | R | L | A | A | L | G | T | . |
A | T | V | M | P | L | A | A | P | I | G | S | G | W | G | V | R | T | R | A | L | L | E | L | F | A | R | E | K | A | S | L | P | P | V | V | V | D | A | G |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  | T |
| . | S |
| B |  |  | B | S | S | S | T | T | S |
|
|
| S | S | S |  |  |  |  |  |  |  |  |  | T | G | G | G | S | S |
| B |  |  |  | S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
108 | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | |
. | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
  |
  |   |
763 | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | V | I | D | E | T | L | R | Q | R | T | S | S | L | F | R | G | I | I | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |   |
|   |   |
|
|   |   |
|   |
|
Template Sequence |   |
L | G | L | P | S | H | A | A | E | V | M | E | L | G | L | D | A | V | L | V |
Template Known Secondary structure |   |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
187 | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|