Job Description P39453 Confidence 96.63% Date Thu Jan 5 12:00:52 GMT 2012 Rank 198 Aligned Residues 85 % Identity 24% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		552	.	.	.	.	.	.	.	560																									.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580			.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		P	C	A	L	M	G	D	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	R	Q	V	I	T	N	L	L	S	N	A	L	R	F	T	D	E	G	.	.	Y	I	I	L	R	S	R	T	D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		P	D	T	Y	I	G	S	V	E	L	V	T	Q	Q	M	W	V	Y	D	E	D	V	G	I	N	Y	R	E	V	T	F	V	P	G	L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D	P	E	N	N	L	I	S	I	W	N	N	G	K	G	I	P
Template Known Secondary structure		T								S											T	T	T																											G	G	G	T		T	T										T	T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		606	.									.	.	610	.	.	.	.	.	.	.	.	.	620									.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		P	A	.	.	.	.	.	.	.	.	K	L	A	E	I	F	Q	P	F	V	Q	V	S	.	.	.	.	.	.	.	.	G	K	R	G	G	T	G	L	G	L	T	I	S	S	R	L
Query Conservation				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F
Template Known Secondary structure			S			T	T	T	T										S	S	S			S				G	G	G					S			S	S									T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions