Job Description P39453 Confidence 65.48% Date Thu Jan 5 12:00:52 GMT 2012 Rank 298 Aligned Residues 150 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690				.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																					.																																										.	.	.
Query SS confidence																					.																																										.	.	.
Query Sequence		T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	T	.	P	E	V	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	E	D	N	.	.	.	P	L	T	Q	R	I	T	I	E	M	L	K	T	S	G	A
Query Conservation																					.																																										.	.	.
Alig confidence																					.																																										.	.	.
Template Conservation
Template Sequence		I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V
Template Known Secondary structure											T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		707	.	.	710	.	.	.	.								.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.			.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750					.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																					.	.																	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																					.	.																	.	.	.	.
Query Sequence		Q	I	V	A	V	G	N	A	.	.	.	.	.	.	.	A	Q	A	L	E	T	L	Q	N	S	E	P	F	A	A	A	L	V	D	F	.	.	D	L	P	D	I	D	G	I	T	L	A	R	Q	L	A	Q	.	.	.	.	Q	Y	P	S	L	V	L	I	G	F	S	A	H	V	I	D	E	T	L	R	Q	R	T
Query Conservation										.	.	.	.	.	.	.																					.	.																	.	.	.	.
Alig confidence										.	.	.	.	.	.	.												.									.	.																	.	.	.	.
Template Conservation																												.
Template Sequence		Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	.	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S
Template Known Secondary structure							S	S				T	T													T	T	.		S									S			S	S	T																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure																												.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		774					.	.	.	.	.	780	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		S	.	.	.	.	S	L	F	R	G	I	I
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		R	F	H	Q	A	S	P	I	G	S	V	I
Template Known Secondary structure					T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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