Job Description P39453 Confidence 96.42% Date Thu Jan 5 12:00:52 GMT 2012 Rank 203 Aligned Residues 129 % Identity 18% Template c1qzrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) Resolution 1.90 Å

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		552	.	.	.	.	.	.	.	560																										.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580			.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		P	C	A	L	M	G	D	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	R	Q	V	I	T	N	L	L	S	N	A	L	R	F	T	D	E	G	.	.	Y	I	I	L	R	S	R	T	D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		P	D	T	Y	I	G	S	V	E	T	Q	E	Q	L	Q	W	I	Y	D	E	E	T	D	C	M	I	E	K	N	V	T	I	V	P	G	L	F	K	I	F	D	E	I	L	V	N	A	A	D	N	K	V	R	D	P	S	M	K	R	I	D	V	N	I	H	A	E	E	H	T	I	E	V	K	N	D	G	K	G	I
Template Known Secondary structure		T							S	S											T	T	T	T																																T	T										T	T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		605	.	.									.	.	610	.	.	.	.	.	.	.	.	.	620									.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.		.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																																	.
Query SS confidence					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																																	.
Query Sequence		D	P	A	.	.	.	.	.	.	.	.	K	L	A	E	I	F	Q	P	F	V	Q	V	S	.	.	.	.	.	.	.	.	G	K	R	G	G	T	G	L	G	L	T	I	S	S	R	L	A	Q	A	M	G	G	E	L	S	A	T	S	T	P	E	V	.	G	S	C	F	C	L	R	L	P	L	R	V	A	T	A
Query Conservation					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																																	.
Alig confidence					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.												.	.	.	.																		.
Template Conservation																																													.	.	.	.
Template Sequence		P	I	E	I	H	N	K	E	N	I	Y	I	P	E	M	I	F	G	H	L	L	T	S	S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	.	.	.	.	L	C	N	I	F	S	T	E	F	I	L	E	T	A	D	L	N	V	G	Q	K	Y	V	Q	K	W	E	N	N	M	S	I	C
Template Known Secondary structure				S	B		T	T	T		S	B								S	S	S			S				T	T	S					S			S	S					.	.	.	.					T											T	T	T	T									T	T	T	T
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	P	P	K	I	T	S	Y	K	K	G	P	S	Y	T	K	V
Template Known Secondary structure											S	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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