Job Description P39453 Confidence 99.60% Date Thu Jan 5 12:00:52 GMT 2012 Rank 135 Aligned Residues 257 % Identity 15% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580					.	.	.	.	.	.	.				.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620						.	.	.	.
Predicted Secondary structure																										.	.	.	.								.	.	.																																		.	.	.	.	.
Query SS confidence																										.	.	.	.								.	.	.																																		.	.	.	.	.
Query Sequence		G	D	P	R	R	I	R	Q	V	I	T	N	L	L	S	N	A	L	R	F	T	D	E	G	.	.	.	.	Y	I	I	L	R	S	R	.	.	.	T	D	G	E	Q	W	L	V	E	V	E	D	S	G	C	G	I	D	P	A	K	L	A	E	I	F	Q	P	F	V	Q	V	S	.	.	.	.	.	G	K	R	G
Query Conservation																										.	.	.	.								.	.	.																																		.	.	.	.	.
Alig confidence																										.	.	.	.								.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		N	P	A	R	A	L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G
Template Known Secondary structure		S																			T	T	G	G	G	T														T	T	T	T										S					G	G	G							S	S	S			S			S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.		.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.								.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																					.																				.	.	.	.	.	.	.
Query SS confidence																					.																				.	.	.	.	.	.	.
Query Sequence		G	T	G	L	G	L	T	I	S	S	R	L	A	Q	A	M	G	G	E	.	L	S	A	T	S	T	P	E	V	G	S	C	F	C	L	R	L	P	L	.	.	.	.	.	.	.	R	V	A	T	A	P	V	P	K	T	V	N	Q	A	V	R	L	D	G	L	R	L	L	L	I	E	D	N	P	L	T	Q	R	I
Query Conservation																					.																				.	.	.	.	.	.	.
Alig confidence																					.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R
Template Known Secondary structure			S	S																									T	T		S											T	T	T	T														S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		697	.	.	700	.	.	.	.								.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760						.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																				.																						.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																				.																						.	.	.	.	.
Query Sequence		T	I	E	M	L	K	T	S	.	.	.	.	.	.	.	G	A	Q	I	V	A	V	G	N	A	A	Q	A	L	E	T	L	Q	N	S	E	P	F	A	A	A	L	V	D	F	D	L	P	D	I	.	D	G	I	T	L	A	R	Q	L	A	Q	Q	Y	P	S	L	V	L	I	G	F	.	.	.	.	.	S	A	H
Query Conservation										.	.	.	.	.	.	.																																				.																						.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																							.													.																						.	.	.	.	.
Template Conservation																																							.
Template Sequence		I	Y	E	Y	I	K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	.	K	P	P	Q	E	V	K	P	H	P	Y	G	V	D	R	E	E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I	K	E	F	L	V	N	E	F	Q	S	I
Template Known Secondary structure											T	T		T	T								T	T	S										S				.										S	T	T												T		S	S			B										T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.							.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure																	.																		.	.	.	.	.	.
Query SS confidence																	.																		.	.	.	.	.	.
Query Sequence		V	I	D	E	T	L	R	Q	R	T	S	S	L	F	R	.	G	I	I	P	K	P	V	P	R	E	V	L	G	Q	L	L	A	.	.	.	.	.	.	H	Y	L	Q	L	Q	V	N	N	D	Q	S	L	D	V	S	Q	L	N
Query Conservation																	.																		.	.	.	.	.	.
Alig confidence																	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	T	T	A	D	K	I	L	E	L	A	G	L	K	P	N	K	K	V	K	N	L	T	E	E	E	I	T	R	L	V	E	T	F	K	K	Y	E	D	F	R	S	P	S	A	D	S	L	S	V	I	G	E	D	L	I	E
Template Known Secondary structure														T			T	T	S	B	G	G	G																	S							G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions