 |
Job Description | P39453 | Confidence | 67.72% | Date | Thu Jan 5 12:00:52 GMT 2012 |
Rank | 291 | Aligned Residues | 108 |
% Identity | 23% | Template | c1kjjA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2; |
PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s
|
Resolution | 1.75 Å |
|
 |
  |   |
678 | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
R | L | D | G | L | R | L | L | L | I | E | D | N | P | L | T | Q | R | I | T | I | E | M | L | K | T | S | G | A | Q | I | V | A | V | G | N | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | Q | A | L | E | T | L | Q | N | S | E | P | F | A | A | A | L | V | D | F | D | . |
. |
. |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |
| . |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |
Template Sequence |   |
R | P | A | A | T | R | V | M | L | L | G | S | G | E | L | G | K | E | V | A | I | E | . |
C | Q | R | L | G | V | E | V | I | A | V | D | R | Y | A | D | A | P | A | M | H | V | A | H | R | S | H | V | I | N | M | L | D | G | D | A | L | R | R | V | V | E | L | E | K | P | H | Y | I | V | P | E | I | E | A | I | A |
Template Known Secondary structure |   |
S | T | T |
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  | . |  |  | T | T | T |
|  |  |  |  |  |  | S | S | T | T |
| G | G | G | G | G | S | S |  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
| S | S |
| S |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
736 | . | . | . | 740 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | P | D | I | D | G | I | T | L | A | R | Q | L | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
Q | Q | Y | P | S | L | V | L | I | G | F | S | A | H | V | I | D | E | T | L | R | Q | R | T | S | S | L | F | R | G | I | I | P | K | P | V | P |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |
|   |   |   |   |   |   |
|
| . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
Template Sequence |   |
T | D | M | L | I | Q | L | E | E | E | G | L | N | V | V | P | C | A | R | A | T | K | L | T | M | N | R | E | G | I | R | R | L | A | A | E | E | L | Q | L | P | T | S | T | Y | R | F | A | D | S | E | S | L | F | R | E | A | V | A | D | I | G | Y | P | C | I | V | K | P | V | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|  |  | S | S |
|  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  | T | T | S |
|
|
|
|
|
|  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|