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Job DescriptionP16678
Confidence100.00%DateThu Jan 5 11:35:22 GMT 2012
Rank34Aligned Residues233
% Identity27%Templatec3nhaA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial; PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  NQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLL
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Template Sequence  QKGRIEFENVHFSYADRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS. . . . L
Template Known Secondary structure  SS


S



S
TT

STTSSTTSS

STTGGGS
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   586...590.........600.........610.........620.........630.........640.........650.........660 .
 
   82.......90.........100.........110.........120..... ....130.........140.........150........
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Query Sequence  RTEWGVVHQHPLDGLRRQVSAGGNIGERLMATGARHYGDIRATA. . . QKWLEEVEIPANRIDDLPTTFSGGMQQRLQIAR
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Template Sequence  RSHIGVVPQDTV. . . LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR
Template Known Secondary structure  T
SS

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STTSTT

T
TSTTGGG
STTSB


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   663......670.... .....680.........690.........700.........710.........720.........730.........
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  NLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPH
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Template Sequence  TILKAPGIILLDEATSALDTSNERAIQASLAKVCA. . NRTTIVVAHRLSTVV. NADQILVIKDGCIVERGRHEALLSR. G
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S

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T..TS

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   740.........750.........760.........770.... .....780......... 790.........800.........810.... .
 
   239240.....
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Query Sequence  HPYTQLL
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Template Sequence  GVYADMW
Template Known Secondary structure  S
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   816...820..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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