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Job DescriptionP16678
Confidence96.15%DateThu Jan 5 11:35:22 GMT 2012
Rank355Aligned Residues146
% Identity15%Templatec3dm5A_
PDB info PDB header:rna binding protein, transport proteinChain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
Resolution2.51 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
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Query Sequence  VLGIVGESGSGKTTLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGERLMA
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Template Sequence  ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI. . . . . . . . . . . . . . . . . . . . EVFGN
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TTSSTTT




SSTGGGT
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   102.......110.........120.........130.........140.........150...... ...160.
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  TGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLV
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Template Sequence  PQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILV. . . . . IDGTIGQQAYNQALAFK
Template Known Secondary structure  TT


TT
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   162.......170.........180.........190.........200.........210......... 220.........230......
 
   193......200...
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Query Sequence  VELNLAVVIVT
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Template Sequence  EATPIGSIIVT
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TT
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   237..240.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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