Job Description P16678 Confidence 100.00% Date Thu Jan 5 11:35:22 GMT 2012 Rank 4 Aligned Residues 239 % Identity 27% Template c2it1B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii Resolution 1.94 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Q	P	L	L	S	V	N	N	L	T	H	L	Y	A	P	G	K	G	F	S	D	V	S	F	D	L	W	P	G	E	V	L	G	I	V	G	E	S	G	S	G	K	T	T	L	L	K	S	I	S	A	R	L	T	P	Q	Q	G	E	I	H	Y	E	N	R	S	L	Y	A	M	S	E	A	D	R	R	R	L
Query Conservation
Alig confidence				.	.	.																																																																							.	.	.	.	.
Template Conservation				.	.	.																																																																							.	.	.	.	.
Template Sequence		V	E	.	.	.	I	K	L	E	N	I	V	K	K	F	G	N	F	T	A	L	N	N	I	N	L	K	I	K	D	G	E	F	M	A	L	L	G	P	S	G	S	G	K	S	T	L	L	Y	T	I	A	G	I	Y	K	P	T	S	G	K	I	Y	F	D	E	K	D	V	T	E	L	P	P	K	.	.	.	.	.
Template Known Secondary structure				.	.	.											T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S				.	.	.	.	.
Template Predicted Secondary structure				.	.	.																																																																							.	.	.	.	.
Template SS confidence
		2	.				.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	E	W	G	V	V	H	Q	H	P	L	D	G	L	R	R	Q	V	S	A	G	G	N	I	G	E	R	L	M	A	T	G	A	R	H	Y	G	D	I	R	A	T	A	Q	K	W	L	E	E	V	E	I	P	A	N	R	I	D	D	L	P	T	T	F	S	G	G	M	Q	Q	R	L	Q	I	A	R	N	L
Query Conservation
Alig confidence		.													.	.																					.																			.
Template Conservation		.													.	.																					.																			.
Template Sequence		.	D	R	N	V	G	L	V	F	Q	N	W	A	.	.	L	Y	P	H	M	T	V	Y	K	N	I	A	F	P	L	E	L	R	K	A	.	P	R	E	E	I	D	K	K	V	R	E	V	A	K	M	L	H	I	.	D	K	L	L	N	R	Y	P	W	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L
Template Known Secondary structure		.			T						T	T			.	.			T	T	S													T	T		.																T	T		.	G	G	G	T	T	S		G	G	G	S
Template Predicted Secondary structure		.													.	.																					.																			.
Template SS confidence
			74	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	H	P	K	L	V	F	M	D	E	P	T	G	G	L	D	V	S	V	Q	A	R	L	L	D	L	L	R	G	L	V	V	E	L	N	L	A	V	V	I	V	T	H	D	L	G	V	A	R	L	L	A	D	R	L	L	V	M	K	Q	G	Q	V	V	E	S	G	L	T	D	R	V	L	D	D	P	H	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	E	P	E	V	L	L	L	D	E	P	L	S	N	L	D	A	L	L	R	L	E	V	R	A	E	L	K	R	L	Q	K	E	L	G	I	T	T	V	Y	V	T	H	D	Q	A	E	A	L	A	M	A	D	R	I	A	V	I	R	E	G	E	I	L	Q	V	G	T	P	D	E	V	Y	Y	K	P	K	Y	K
Template Known Secondary structure		T	T			S						S	G	G	G	G	S																				T								S										S							T	T														S		S	B
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	Q	L	L	V	S	S	V	L	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	G	G	F	L	G	N	P	P	M	N
Template Known Secondary structure							S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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