 |
Job Description | P16678 | Confidence | 95.78% | Date | Thu Jan 5 11:35:22 GMT 2012 |
Rank | 408 | Aligned Residues | 35 |
% Identity | 20% | Template | c1ojlF_ |
PDB info |
PDB header:response regulator | Chain: F: PDB Molecule:transcriptional regulatory protein zrar; |
PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding
|
Resolution | 3.0 Å |
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | P | G | E | V | L | G | I | V | G | E | S | G | S | G | K | T | T | L | L | K | S | I | S | A | R | L | T | P | Q | Q | G | E | I | H |
Query Conservation |   |
  |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |
|   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
P | S | D | A | T | V | L | I | H | G | D | S | G | T | G | K | E | L | V | A | R | A | L | H | A | C | S | A | R | S | D | R | P | L | V |
Template Known Secondary structure |   |
S | T | T |
|
|  |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  | S | S |
| S | S | S |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|