Job Description P45799 Confidence 99.22% Date Thu Jan 5 12:03:47 GMT 2012 Rank 78 Aligned Residues 105 % Identity 16% Template c2j8qB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. Resolution 2.3 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																.	.																																													.	.
Query SS confidence																.	.																																													.	.
Query Sequence		N	R	E	A	V	M	I	V	P	I	V	D	D	H	.	.	L	I	L	I	R	E	Y	A	V	G	T	E	S	Y	E	L	G	F	S	K	G	L	I	D	P	G	E	S	V	Y	E	A	A	N	R	E	L	K	E	E	V	G	F	G	.	.	A	N	D	L	T	F	L	K	K	L	S	M	A	P	S	Y	F	S
Query Conservation																.	.																																													.	.
Alig confidence																.	.							.	.	.	.	.																																		.	.
Template Conservation																								.	.	.	.	.
Template Sequence		R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	.	.	.	.	.	G	T	T	F	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	R	Q	D	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N	F	E	P	P
Template Known Secondary structure												S	S	S										.	.	.	.	.	S	T	T					S						T	T																																		S	S	S	S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		122	.												.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	.	.	.	.	.	.	.	.	.	.	.	M	N	I	V	V	A	Q	D	L	Y	P	E	S	L	E	G	D	E	P	E	P	L	P	Q	V	R	W	P	L	A	H	M
Query Conservation				.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	P	K	N	Y	K	L	V	A	A	P	L	F	E	L
Template Known Secondary structure			B	S	S			T	T		S			S												S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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