Job Description P0CF59 Confidence 99.58% Date Thu Jan 5 11:31:15 GMT 2012 Rank 17 Aligned Residues 277 % Identity 13% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.								.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																	.	.	.
Query Sequence		S	A	R	A	L	I	A	R	G	W	G	V	S	L	V	S	R	C	L	.	.	.	.	.	.	.	R	V	S	R	A	Q	L	H	V	I	L	R	R	T	D	D	.	.	.	W	M	D	G	R	R	S	R	H	T	D	D	T	D	V	L	L	R	I	H	H	V	I	G	E	L	P	T	Y	G	Y	R	R	V	W
Query Conservation																					.	.	.	.	.	.	.																	.	.	.
Alig confidence																					.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	L	I	F	C	F	H	L	K	K	T	A	A	E	S	H	R	M	L	V	E	A	F	G	E	Q	V	P	T	V	K	T	C	E	R	W	F	Q	R	F	K	S	G	D	F	D	V	D	D	K	E	H	G	K	P	P	K	R	Y	E	D	A	E	L	Q	A	L	L	D	E	D	D	A	Q	T	Q	K	Q	L	A
Template Known Secondary structure									T	T														T		S		S															T	T				S	S										S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																																.	.	.	.	120	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	L	R	R	Q	A	E	L	D	G	M	P	A	I	N	A	K	R	V	Y	R	I	M	R	Q	N	A	L	L	L	E	R	K	P	A	V	P	P	S	K	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	G	R	V	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	L	E	.	.	.	.	.	.	.	.	.	.	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S	F	L	H	R	I	V	T	G	D	E	K	W	I	F	F	V
Template Known Secondary structure		T	T	T	T	.	.	.	.	.	.	.	.	.	.	S												T	T										S																											G	G	G	G											S	B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.											.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		V	K	E	S	N	Q	R	W	C	S	D	G	.	.	.	.	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		N	P	K	R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N	R	A	L	Q	R	K	R	P	E	Y	R	V	I	F	L	H
Template Known Secondary structure											S	S	S											S	S												T	T										S	S																								S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		D	N	G	S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	.	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L
Query Conservation																																							.
Alig confidence																																			.				.									.
Template Conservation																																			.													.
Template Sequence		D	N	A	P	S	H	T	A	R	A	V	R	D	T	L	E	T	L	N	W	E	V	L	P	H	A	A	Y	S	P	D	L	A	.	P	S	D	Y	H	L	F	A	S	M	G	H	.	A	L	A	E	Q	R	F	D	S	Y	E	S	V	K	K	W	L	D	E	W	F	A	A	K	D	D	E	F	Y	W	R	G	I
Template Known Secondary structure					S	T	T	S										T	T									T	T		T	T	S		.					T								.		T	T	T		B		S	S															S
Template Predicted Secondary structure																																			.													.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	R	S	P	R	E	Y	L	R	Q	R	A	C	N	G
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		H	K	L	.	P	E	R	W	E	K	C	V	A	S	D	G
Template Known Secondary structure					.										T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		327	.	.		330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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