Job Description P0CF59 Confidence 99.40% Date Thu Jan 5 11:31:15 GMT 2012 Rank 18 Aligned Residues 147 % Identity 14% Template c3dlrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase Resolution 2.20 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	X	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	N	V	L	T	.	.	.	.	.	.	.	.	.	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A
Template Known Secondary structure				T	T	S											S		B	T	T	B									T	T	T									S	S	S													T	.	.	.	.	.	.	.	.	.	T	T				S						S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																					.																					.								.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																					.																					.								.
Template Sequence		F	T	S	S	T	F	A	E	W	A	K	E	R	G	I	H	L	.	.	.	.	.	.	.	.	.	.	E	F	S	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	.	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	T	.	Y	S	P	V	L	K	Y	.	T	P	H
Template Known Secondary structure				S											T				.	.	.	.	.	.	.	.	.	.																				T	.	T		G	G	G														T	S	.			S	S		S	S	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																					.																					.								.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.		.	.	.
		283	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	L	R	Q	R	A	C	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	L	F	G	S	L	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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