Job Description P27833 Confidence 99.91% Date Thu Jan 5 11:44:10 GMT 2012 Rank 177 Aligned Residues 328 % Identity 16% Template d1rv3a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																.	.	.	.											.							.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																.	.	.	.											.							.	.	.	.
Query Sequence		M	I	P	F	N	A	P	P	V	V	G	T	E	L	D	Y	M	Q	S	A	M	G	.	.	.	.	.	.	.	.	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	.	.	.	.	Q	W	L	E	Q	R	F	G	S	A	.	K	V	L	L	T	P	.	.	.	.	S	C	T	A	S	L	E	M	A	A
Query Conservation																								.	.	.	.	.	.	.	.																.	.	.	.											.							.	.	.	.
Alig confidence					.																			.	.	.	.	.	.	.	.																.	.	.	.											.							.	.	.	.
Template Conservation					.
Template Sequence		L	I	A	.	S	E	N	F	A	S	R	A	V	L	E	A	L	G	S	C	L	N	N	K	Y	S	L	G	Y	P	G	Q	R	Y	Y	G	G	T	E	H	I	D	E	L	E	T	L	C	Q	K	R	A	L	Q	A	Y	G	L	D	P	Q	C	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	F	A	V	Y
Template Known Secondary structure				T	.	T													T	S	G	G	G	T							T	T			S	S	S																				T	T			T	T	T								S	S
Template Predicted Secondary structure					.
Template SS confidence
		50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.											.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		L	L	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	.	.	.	.	.	.	.	.	.	.	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	.	.	R	V	I	V	P	V	H	Y	A	G	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence					.																													.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation					.
Template Sequence		T	A	L	.	V	E	P	H	G	R	I	M	G	L	D	L	P	D	G	G	H	L	T	H	G	F	M	T	D	K	K	K	I	S	A	T	S	I	F	F	E	S	M	A	Y	K	V	N	P	D	T	G	Y	I	D	Y	D	R	L	E	E	N	A	R	L	F	H	P	K	L	I	I	A	G	T	S	C	Y	S	R
Template Known Secondary structure					.	T		T	T								G	G	G	T			G	G	G			B		S	S		B		S						S							B		T	T	T		S	B															S							S	S			S
Template Predicted Secondary structure					.
Template SS confidence
		129	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.											.	.	.	200	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	.	.	.	.	.	.	.	.	.	.	K	A	L	I	E
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	D	Y	G	R	L	R	K	I	A	D	E	N	G	A	Y	L	M	A	D	M	A	H	I	S	G	L	V	V	A	G	V	V	P	S	P	F	E	H	C	H	V	V	T	T	T	T	H	K	T	L	R	G	C	R	A	G	M	I	F	Y	R	R	G	V	R	S	E	I	L	Y	N	L	E	S	L	I	N	S
Template Known Secondary structure															T	T								T	T	T							T	S	S			G	G	G	T		S						S	S	G	G	G				S									S	B					B
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Sequence		A	V	F	P	G	L	Q	G	G	P	H	N	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	G	V	A	V	A	L	K	Q	A	M	T	P	E	F	K	E	Y	Q	R	Q	V	V	A	N	C	R	A	L	S	A	A	L	V	E	.	.	.	.	.	.	.	L	G	Y	K
Template Known Secondary structure				T	T	T	T			S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	S																								.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.																				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.								.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		I	P	D	G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	.	.	.	.	L	F	Y
Query Conservation																																																																											.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	T	G	G	S	D	N	H	L	I	L	V	D	L	R	S	K	G	T	D	G	G	R	A	E	K	V	L	E	A	C	S	I	A	C	N	K	N	T	C	P	G	D	K	S	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	G	L	R	L	G	T	P	A	L	T	S	R
Template Known Secondary structure			G	G	G	S		S	S	S						G	G	G	G	T													T	T									S	S		S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.																		.	.	400	.	.	.	.	.	.	.	.	.	410	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	L	E	K	D	F	Q	K	V	A	H	F	I	H	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions