Job Description P27833 Confidence 99.94% Date Thu Jan 5 11:44:10 GMT 2012 Rank 135 Aligned Residues 331 % Identity 14% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		1	.	.	.			.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure						.	.							.	.																	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence						.	.							.	.																	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		M	I	P	F	.	.	N	A	P	P	V	V	.	.	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	.	.	.	.	.	.	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	S	.	.	.	.	.	.	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L
Query Conservation						.	.							.	.																	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence						.	.							.	.																	.	.	.	.	.	.																					.	.	.	.	.	.														.
Template Conservation																																																																													.
Template Sequence		I	I	S	L	G	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A	G	R	A	A	D	E	I	F	I	S	D	G	S	K	C	D	I	.	A	R	I	Q
Template Known Secondary structure						S	S	S																					G	G	G	S						S	S		T	T															T	T	T	T			G	G	G					S							.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		L	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	.	.	.	.	.	.	.	.	.	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence				.																																																.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation				.
Template Sequence		M	M	.	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R
Template Known Secondary structure				.			S	S	S							S			T									T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S					S						S	S		T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.																			.
Query SS confidence																																				.	.	.	.	.																			.
Query Sequence		C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	.	.	.	.	.	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	.	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I
Query Conservation																																				.	.	.	.	.																			.
Alig confidence																																				.	.	.	.	.																			.													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	I	P	G	A	D	E	V	A	I	E	T	C	S	F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T								S	G	G	G	T		T	T										T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	.	.	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D
Query Conservation																																													.	.
Alig confidence		.	.	.	.																																								.	.																										.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																			.	.	.	.	.	.
Template Sequence		.	.	.	.	A	L	K	Y	A	N	G	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	E	M	N	A	M	I	K	F	Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	.	.	.	.	.	.	G	F	S	V
Template Known Secondary structure		.	.	.	.	T		B		T	T	S		B												S																T	S																												T	.	.	.	.	.	.	T
Template Predicted Secondary structure		.	.	.	.																																																																			.	.	.	.	.	.
Template SS confidence
						299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		Y	G	G	D	D	A	P	Y	I	W	V	G	F	P	G	K	P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	F	V	R	A	S	A	F	.	.	G	S	R	E	N	I
Template Known Secondary structure				S	S	S	S	S							T	T	S																				G	G	G	G		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								.	.	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.																					.	.	.	.	.	.	.	.	420			.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	V	I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	A	V	R	R	F	K	E	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions