Phyre 2 alignment of P27833 with c3ndnC

Job Description P27833
Confidence 100.00% Date Thu Jan 5 11:44:10 GMT 2012

Rank 26 Aligned Residues 334

% Identity 17% Template c3ndnC_

PDB info PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																						.	.																																																						.	.	.	.
Query SS confidence																						.	.																																																						.	.	.	.
Query Sequence	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	.	.	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	.	.	.	.
Query Conservation																						.	.																																																						.	.	.	.
Alig confidence																						.	.																																					.																	.	.	.	.
Template Conservation																																																												.
Template Sequence	S	A	A	V	A	E	K	S	F	A	G	E	L	D	H	Y	V	Y	S	R	Y	G	N	P	T	V	S	V	F	E	E	R	L	R	L	I	E	G	A	P	A	A	F	A	T	A	S	G	M	A	A	V	F	T	S	L	G	A	L	.	L	G	A	G	D	R	L	V	A	A	R	S	L	F	G	S	C	F	V	V
Template Known Secondary structure	S									T	T	S	S					B	T	T	T																	T		S						S	S											T	T	.			T	T							S	S
Template Predicted Secondary structure																																																												.
Template SS confidence
	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence	C	S	E	I	L	P	R	W	G	V	Q	T	V	F	V	D	G	D	.	.	.	D	L	S	Q	W	E	R	A	L	S	V	P	T	Q	A	V	F	F	E	T	P	S	N	P	M	Q	S	L	V	D	I	A	A	V	T	E	L	A	H	A	A	G	A	K	V	V	L	D	N	V	F	A	T	P	L	L	Q	Q	G
Template Known Secondary structure			T					T	T								T	T	.	.	.									T	T	S			S						S	S		T	T	T																T	T								T	T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L
Query Conservation
Alig confidence					.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	P	L	G	.	.	.	.	V	D	V	V	V	Y	S	G	T	H	I	D	G	Q	G	R	V	L	G	G	A	I	L	G	D	R	E	Y	I	D	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	K	L	M	R	H	T	G	P	A	M	S	A	F	N	A	W	V	L
Template Known Secondary structure	G	G	G	T	.	.	.	.		S										S		S	S																T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	206	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.										.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query Sequence	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	.	.	.	.	.	.	.	.	.	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	.	.	.	.	.	L	I	N	F
Query Conservation																																												.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation
Template Sequence	L	K	G	L	E	T	L	A	I	R	V	Q	H	S	N	A	S	A	Q	R	I	A	E	F	L	N	G	H	P	S	V	R	W	V	R	Y	P	Y	L	P	S	H	P	Q	Y	D	L	A	K	R	Q	M	S	G	G	G	T	V	V	T	F	A	L	D	C	P	E	D	V	A	K	Q	R	A	F	E	V	L	D	K
Template Known Secondary structure																											T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	L	K	E	A	E	I	M	A	V	F	H	Y	I	.	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence	M	R	L	I	D	I	S	N	N	L	G	D	A	K	S	L	V	T	H	P	A	T	T	T	H	R	A	M	G	P	E	G	R	A	A	I	G	L	G	D	G	V	V	R	I	S	V	G	L	E	D	T	D	D	L	I	A	D	I	D	R	A	L
Template Known Secondary structure		S	S	S				S			S		S	S						G	G	G	T	T	T	S	T	T							T	T	T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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