Job Description P27833 Confidence 99.95% Date Thu Jan 5 11:44:10 GMT 2012 Rank 119 Aligned Residues 322 % Identity 13% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.									.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																	.	.	.	.											.
Query SS confidence																									.	.	.	.	.	.	.	.																	.	.	.	.											.
Query Sequence		M	I	P	F	N	A	P	P	V	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	.	.	.	.	.	.	.	.	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	.	.	.	.	L	E	Q	R	F	G	S	A	K	V	.	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D
Query Conservation																									.	.	.	.	.	.	.	.																	.	.	.	.											.
Alig confidence					.																				.	.	.	.	.	.	.	.																	.	.	.	.											.																		.
Template Conservation					.																																																																												.
Template Sequence		X	I	A	.	S	E	N	F	T	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	K	F	A	N	V	Q	P	N	S	G	S	Q	A	N	Q	G	V	Y	A	A	L	.
Template Known Secondary structure				T	.	T													T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S													.
Template Predicted Secondary structure					.																																																																												.
Template SS confidence
		27	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.																																		.
Template Conservation																		.	.	.	.	.	.	.	.	.																																		.
Template Sequence		I	N	P	G	D	K	I	L	G	X	D	L	K	X	Y	E	.	.	.	.	.	.	.	.	.	S	C	F	Y	G	V	E	L	D	G	R	I	D	Y	E	K	V	R	E	I	A	K	K	E	K	P	K	L	I	V	C	G	A	.	S	A	Y	A	R	V	I	D	F	A	K	F	R	E	I	A	D	E	I	G	A
Template Known Secondary structure		S		T	T											S		.	.	.	.	.	.	.	.	.								T	T	S	S																S							.	S	S			S															T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R
Query Conservation
Alig confidence																																											.																																	.	.	.	.	.	.
Template Conservation																																											.																																	.	.	.	.	.	.
Template Sequence		Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	Y	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R	G	.	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X	H	V	I	A	.	.	.	.	.	.
Template Known Secondary structure								T	T	T						T	T	S	S				T	T	T		S						S	S	T	T	T		S		S		.						S													T	T	T	T		S	S								.	.	.	.	.	.
Template Predicted Secondary structure																																											.																																	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																				.							.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																				.							.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	.	K	F	K	L	V	S	.	.	.	.	.	.	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										T	S																								T	.	T				G	G	.	.	.	.	.	.	G	S		S	S	S							T	T	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																				.							.	.	.	.	.	.
Template SS confidence
											264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	.	.	.	.	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N
Query Conservation																																																			.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	L	G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D
Template Known Secondary structure							T	T									T	T			S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S												T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.																	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions