Job Description P27833 Confidence 99.85% Date Thu Jan 5 11:44:10 GMT 2012 Rank 215 Aligned Residues 310 % Identity 15% Template c3lv2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin Resolution 2.18 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.															.	.																									.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.															.	.																									.	.	.	.	.	.	.	.
Query Sequence		G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	.	.	.	.	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	.	.	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I	.	.	.	.	.	.	.	.	Q	P	G	D	E	V	I	M
Query Conservation																						.	.	.	.															.	.																									.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.															.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	L	D	Q	A	L	T	T	Q	L	R	V	M	N	H	V	M	F	G	G	L	T	H	E	P	A	A	R	L	A	K	L	L	V	D	I	T	P	A	G	L	D	T	V	F	F	S	D	S	G	S	V	S	V	E	V	A	A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	K	R	R	L	M	T	W
Template Known Secondary structure																S				S	S	S																	S	S	T	T								S	S																		T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.															.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.								.	.	.											.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.								.	.	.											.
Query Sequence		P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	.	.	.	.	D	K	T	R	V	I	V	.	.	.	P	V	H	Y	A	G	V	A	C	E	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.								.	.	.											.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.								.	.	.											.
Template Conservation
Template Sequence		R	G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G	M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E	A	Q	L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M	R	F	H	D
Template Known Secondary structure		T	T					S	S					T	T	S		T	T	T	T	T	G	G	G	T		S	S	S											S	S																	G	G	G								S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
					135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																							.	.	.	.
Query SS confidence		.	.	.																							.	.	.	.
Query Sequence		.	.	.	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	.	.	.	.	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R
Query Conservation		.	.	.																							.	.	.	.
Alig confidence		.	.	.																							.	.	.	.																					.	.	.	.																										.	.
Template Conservation																																																			.	.	.	.																										.	.
Template Sequence		P	R	Y	L	H	D	L	R	D	I	C	R	R	Y	E	V	L	L	I	F	D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	C	V	G	.	.	.	.	K	A	L	T	G	G	Y	L	S	L	A	A	T	L	C	T	A	D	V	A	H	T	I	S	A	.	.
Template Known Secondary structure		T													T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						.	.	.	.	G	G	G	G	T	T	S	S																		.	.
Template Predicted Secondary structure																																																			.	.	.	.																										.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	.	.	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G
Query Conservation																																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.																																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	L	M	R	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E	L	L	L	G	Q	D	W	R	T	R	I	T	E	L	A	A	G	L	T	A	G	L	D	T	A	R	A	L	P	A	V	T	D	V	R	V	C	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S					S			T	T	T	T																	T	S																		G	G	G	G	G	S	T	T								.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.
Template SS confidence
																		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R
Query Conservation
Alig confidence		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	G	A	I	G	V	I	E	C	D	R	P	V	D	L	A	V	A	T	P	A	A	L	D	R	G	V	W	L	R	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	L	V	Y	A	M	P	P	Y	I	C	T	P	A	E	I	T
Template Known Secondary structure		.	.	.	.	S	S							S	S													T	T	T						B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.																												.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		366	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	T	S	A	M	V	E	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions