Job Description P27833 Confidence 99.96% Date Thu Jan 5 11:44:10 GMT 2012 Rank 72 Aligned Residues 329 % Identity 16% Template c3l8aB_ PDB info PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans Resolution 1.54 Å

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		1	.	.	.			.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.							.	.																																					.	.	.	.	.	.	.	.
Query SS confidence						.	.							.	.																																					.	.	.	.	.	.	.	.
Query Sequence		M	I	P	F	.	.	N	A	P	P	V	V	.	.	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	S	.	.	.	.	.	.	.	.	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I
Query Conservation						.	.							.	.																																					.	.	.	.	.	.	.	.
Alig confidence						.	.							.	.																	.																				.	.	.	.	.	.	.	.																					.
Template Conservation																																.																																																.
Template Sequence		L	L	Q	M	W	V	A	D	M	D	F	L	P	V	P	E	I	K	E	A	I	I	N	Y	G	R	E	H	I	F	.	G	Y	N	Y	F	N	D	D	L	Y	Q	A	V	I	D	W	E	R	K	E	H	D	Y	A	V	V	K	E	D	I	L	F	I	D	G	V	V	P	A	I	S	I	A	L	Q	A	F	.	S
Template Known Secondary structure							S	S				S																			S	.	S																										G	G	G					S														.	S
Template Predicted Secondary structure																																.																																																.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.
Predicted Secondary structure																																								.	.											.	.	.	.																			.	.	.
Query SS confidence																																								.	.											.	.	.	.																			.	.	.
Query Sequence		Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	.	.	I	D	E	T	L	I	E	A	A	I	.	.	.	.	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	C	E	.	.	.	M	D	T	I	M
Query Conservation																																								.	.											.	.	.	.																			.	.	.
Alig confidence																																								.	.											.	.	.	.																			.	.	.
Template Conservation
Template Sequence		E	K	G	D	A	V	L	I	N	S	P	V	Y	Y	P	F	A	R	T	I	R	L	N	D	H	R	L	V	E	N	S	L	Q	I	I	N	G	R	F	E	I	D	F	E	Q	L	E	K	D	I	I	D	N	N	V	K	I	Y	L	L	C	S	P	H	N	P	G	G	R	V	W	D	N	D	D	L	I	K	I	A
Template Known Secondary structure			T									S												T	T												T	T																T	T								S	S	B	T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	.	.	.	.	.	.	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	C	K	K	H	G	V	I	L	V	S	D	E	I	H	Q	D	L	A	L	F	G	N	T	H	H	S	L	N	T	L	D	A	S	Y	K	D	F	T	I	I	L	S	S	A	T	K	T	F	N	I	A	G	T	K	N	S	F	A	I	I	Q	N	E	S	L	R	R	K	F	Q	Y	R	Q	L	A	N	N	Q
Template Known Secondary structure								T								T	T	T	T		B		T	T						G	G	G	S		T	T	G	G	G	T							S					T		G	G	G									S														T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		H	E	V	P	T	V	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	Q	A	A	F	Q	Y	G	K	P	W	L	E	E	L	K	T	V	I	E	G	N	I	K	L	V	I	K	E	L	E	A	K	T	K	I	K	V	M	E	P	E	G	.	.	.	.	.	.	.	.	T	Y	L	V
Template Known Secondary structure		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				S	S							S	B	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.																.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.									320	.	.	.
		294	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure								.															.
Query SS confidence								.															.
Query Sequence		Y	I	K	L	R	D	.	I	D	D	R	S	A	L	I	N	F	L	K	E	A	.	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L
Query Conservation								.															.
Alig confidence								.															.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		W	L	D	F	S	A	Y	A	I	A	Q	P	Q	L	S	E	K	L	Q	N	E	A	K	V	V	L	N	D	G	A	H	F	G	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	F	A	R	L	N	V	A	.	.	T	P	K	N	T	V	Q	E	A	L	S	R	I
Template Known Secondary structure						G	G	G	T			T	T									T	S							G	G	G	G		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								.	.	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.																					360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.
		372	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	Y	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	V	F	G
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions