Job Description P27833 Confidence 99.92% Date Thu Jan 5 11:44:10 GMT 2012 Rank 172 Aligned Residues 329 % Identity 14% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		A	P	P	V	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	.	.	.	.	.	.	.	.	.	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I	Q	P	G	D	E	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence																		.	.	.	.	.																				.	.	.	.	.	.	.	.	.																						.							.	.	.
Template Conservation																		.	.	.	.	.																																																		.
Template Sequence		S	P	S	F	P	E	D	A	K	K	R	A	R	R	I	L	.	.	.	.	.	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	.	V	S	G	G	G	K	S	R	T
Template Known Secondary structure			S	S	S													.	.	.	.	.						S																T	T	T					G	G	G					S	S													.					G	G	G	S
Template Predicted Secondary structure																		.	.	.	.	.																																																		.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.
			74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.																																	.														.	.	.	.	.	.	.	.													.	.	.
Query SS confidence		.																																	.														.	.	.	.	.	.	.	.													.	.	.
Query Sequence		.	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	.	N	I	D	E	T	L	I	E	A	A	I	T	D	.	.	.	.	.	.	.	.	K	T	R	V	I	V	P	V	H	Y	A	G	.	.	.	V	A	C	E	M	D	T	I	M	A
Query Conservation		.																																	.														.	.	.	.	.	.	.	.													.	.	.
Alig confidence		.																																	.														.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H
Template Known Secondary structure								S			T									T	T									B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.														170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	.	.	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L
Template Known Secondary structure							T								T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.																																								.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	.	.	.	.	.	.	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	.	.	.	.
Template Known Secondary structure								S															T					T	T	S	T	T	.	.	.	.	.	.																												T	S	T	T								B	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.							.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.														.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	V	Q	N	A	H	M	F	Y	I	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	Q	R	E	G	T	Y	H	F	R
Template Known Secondary structure		.	.	.	.	S	S																			T	T	S																B					G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T	T			B
Template Predicted Secondary structure		.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.																				.	.	.	.	.	.	490	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		M	T	I	L	P	.	.	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H
Template Known Secondary structure						S	.	.
Template Predicted Secondary structure							.	.
Template SS confidence
		495	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions