Job Description P27833 Confidence 99.76% Date Thu Jan 5 11:44:10 GMT 2012 Rank 230 Aligned Residues 319 % Identity 13% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		11	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																							.	.																							.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																							.	.																							.	.	.	.	.	.	.
Query Sequence		G	T	E	L	D	Y	M	Q	S	A	M	G	.	.	.	.	.	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	.	.	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	.	.	.	.	.	.	.	D	I	Q	P	G	D	E	V	I	M
Query Conservation														.	.	.	.	.																							.	.																							.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																							.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	I	A	E	A	I	A	D	Q	A	R	E	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S
Template Known Secondary structure																S						T	T																	S		T	T								S	S																			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.														.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P
Template Known Secondary structure			T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T																							G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																								.	.	.	.
Query SS confidence												.	.	.	.																								.	.	.	.
Query Sequence		P	V	H	Y	A	G	V	A	C	E	.	.	.	.	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	.	.	.	.	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D
Query Conservation												.	.	.	.																								.	.	.	.
Alig confidence												.	.	.	.																								.	.	.	.																				.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I	A	.	.	.	.	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S
Template Known Secondary structure		S	B	S	T	T	T		B				T	T													T								T	T	T	S	S	S	T	T	S	S	S							T				S						.	.	.	.	G	G	G	T	T	T	S	S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	.	.	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A
Query Conservation																																																										.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.																						.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Sequence		D	K	V	W	K	V	L	E	Q	G	T	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	P	I	G	H	G	W	T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A	E	A	L	S	.
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		S				T	T	T	T																		T	T																					T	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.															.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	.	.	.	.	.	.	.	.	.	.	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T
Query Conservation																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																										.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	Q	H	A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	X	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	T	S	T	T							S	S	S								S	B	T	T	T	T	B				G	G	G																						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	Q	G	D	I	L	G	F	A	P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R	A	V
Template Known Secondary structure		.	.	S	S	S								T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions