Job Description P27833 Confidence 99.94% Date Thu Jan 5 11:44:10 GMT 2012 Rank 129 Aligned Residues 321 % Identity 16% Template c3eleB_ PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution Resolution 2.10 Å

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		5	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																		.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence							.	.																		.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		N	A	P	P	V	.	.	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	.	.	.	.	.	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	.	.	.	.	.	.	.	.	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I	Q
Query Conservation							.	.																		.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence							.	.																		.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	P	S	I	P	A	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S	I	C	F	R	A	L	T	S	D
Template Known Secondary structure						S																	S							S				T	T																							G	G	G					S	S															S
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																						.	.	.														.	.	.
Query SS confidence																																																						.	.	.														.	.	.
Query Sequence		P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	.	.	.	V	I	V	P	V	H	Y	A	G	V	A	C	E	.	.	.	M	D	T	I	M	A	L	A	K
Query Conservation																																																						.	.	.														.	.	.
Alig confidence																																																						.	.	.														.	.	.
Template Conservation
Template Sequence		A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	D	F	D	A	L	E	E	R	I	N	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	T	V	Y	S	E	E	T	I	K	K	L	S	D	L	L	E
Template Known Secondary structure		T	T							S	S			T	T								T	T										T	T	T	S	S									T			T	T								S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		144	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.														.	.																										.
Query SS confidence					.	.	.	.	.	.														.	.																										.
Query Sequence		K	H	N	.	.	.	.	.	.	L	F	V	V	E	D	A	A	Q	G	V	M	S	.	.	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	.	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S
Query Conservation					.	.	.	.	.	.														.	.																										.
Alig confidence					.	.	.	.	.	.														.	.																										.																								.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	D	N	T	L	V	C	Y	S	Y	S	K	S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	Y	A	A	.	.	.	.	.	.	.
Template Known Secondary structure								T	S									T	T	T	T		B		T	T						G	G	G	T		S	S							S	T	T	T	S	S		G	G	G									T	T	S	T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	.	.	.	.	.	.	.	.	.	G	Y	H	C	F	K	P	D	G	A	F	Y	X	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.								T	T				S									T	T		T	T																							.	.	.	.	.	.	.	.	.	T							S	B	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
											275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.										.	.	.	.	.	.	.	330	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y
Query Conservation
Alig confidence								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		V	K	A	L	E	D	.	D	S	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	W	V	R	I	S	Y	C	.	.	V	D	R	E	X	I	K	H	S	X	P	A	F	E	K	I
Template Known Secondary structure					S	S	S	.												T	T						G	G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								.	.	S
Template Predicted Secondary structure								.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		337	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.																							.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		375
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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