Phyre 2 alignment of P27833 with c3e6gA

Job Description P27833
Confidence 99.97% Date Thu Jan 5 11:44:10 GMT 2012

Rank 44 Aligned Residues 313

% Identity 15% Template c3e6gA_

PDB info PDB header:lyase Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein; PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D
Query Conservation
Alig confidence																																				.			.																																					.
Template Conservation																																				.			.																																					.
Template Sequence	H	N	P	T	R	F	A	Y	E	R	C	V	A	A	L	E	G	G	T	R	A	F	A	F	A	S	G	M	A	A	T	S	T	V	M	.	E	L	.	L	D	A	G	S	H	V	V	A	M	D	D	L	Y	G	G	T	F	R	L	F	E	R	V	R	R	R	T	A	G	L	D	F	S	F	V	.	D	L	T	D
Template Known Secondary structure																	T		S						S	S										.	T	T	.	S		T	T							S	S																									.		T	T
Template Predicted Secondary structure																																				.			.																																					.
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	.	.	.	V	H	Y	A	G	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A
Query Conservation																		.	.	.
Alig confidence																		.	.	.																																											.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence	P	A	A	F	K	A	A	I	R	A	D	T	K	M	V	W	I	E	T	P	T	N	P	M	L	K	L	V	D	I	A	A	I	A	V	I	A	R	K	H	G	L	L	T	V	V	D	N	T	F	A	S	P	M	L	Q	R	P	L	S	L	G	.	.	.	.	A	D	L	V	V	H	S	A	T	K	Y	L	N	G
Template Known Secondary structure										T	T								S	S		T	T	T																T	T								S	S	S		T	T	T			G	G	G	G	T	.	.	.	.		S						T	T	T	T	T	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.

	186	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence	G	G	.	.	.	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q
Query Conservation			.	.	.
Alig confidence			.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	S	D	M	V	G	G	I	A	V	V	G	D	N	A	E	L	A	E	Q	M	A	F	L	Q	N	S	I	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	P	F	D	S	F	L	A	L	R	G	L	K	T	L	P	L	R	M	R	A	H	C	E	N	A	L
Template Known Secondary structure	S	S	S										S																		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.											.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	.	.	.	.	.	.	.	.	.	.	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	.	P	L	H	G	C	P	A	G	E
Query Conservation																										.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence																										.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence	A	L	A	Q	W	L	E	T	H	P	A	I	E	K	V	I	Y	P	G	L	A	S	H	P	Q	H	V	L	A	K	R	Q	M	S	G	F	G	G	I	V	S	I	V	L	K	G	G	F	D	A	A	K	R	F	C	E	K	T	E	L	F	T	L	A	E	S	L	G	G	V	E	S	L	V	N	H	P	A	V	M
Template Known Secondary structure								T		T	T							T	T	S	T	T	S	T	T									S	S			S							T	T													S	S	S				S					S	S						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence	T	H	A	S	I	P	V	A	R	R	E	Q	L	G	I	S	D	A	L	V	R	L	S	V	G	I	.	.	.	.	E	D	L	G	D	L	R	G	D	L	E	R
Template Known Secondary structure	T	T		S	S			T	T	T	T	T	S	S			S	S								S	.	.	.	.	S										T	T
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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