Job Description P27833 Confidence 99.87% Date Thu Jan 5 11:44:10 GMT 2012 Rank 206 Aligned Residues 313 % Identity 13% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																.	.	.	.																					.	.	.																							.	.
Query SS confidence																.	.	.	.																					.	.	.																							.	.
Query Sequence		G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	.	.	.	.	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	.	.	.	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	.	.	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F
Query Conservation																.	.	.	.																					.	.	.																							.	.
Alig confidence																.	.	.	.																					.	.	.																							.	.
Template Conservation
Template Sequence		P	A	I	V	A	A	V	S	A	A	A	A	N	P	A	G	A	T	I	L	S	A	S	N	A	P	A	V	T	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	I	W	F	G	H	S	G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	V	I	A	F	A	G	A	Y	H
Template Known Secondary structure														S		S		S		S	S	S	S															T	T	T		T	T	T							S	S																	S								T	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100														.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query Sequence		V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	C	E	.	.	.	.	M	D	T	I	M	A	L	A	K	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		G	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y	R	P	Y	R	N	D	P	T	G	D	A	I	L	T	L	L	T	E	K	L	A	A	V	P	A	G	S	I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A
Template Known Secondary structure			S	S					T	T											S	S	S		B	T	T	B	T	T	S													T	S		T	T									S	S	B	S	T	T	T	S	B				T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		H	N	L	F	V	V	E	D	A	A	Q	G	.	.	.	.	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																					.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	G	I	L	V	V	C	D	E	V	K	V	G	L	A	R	S	G	R	L	H	C	F	E	H	E	G	F	V	P	D	I	L	V	L	G	.	.	.	.	K	G	L	G	G	G	L	P	L	S	A	V	I	A	P	A	E	I	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T								T	T	T		T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						.	.	.	.	G	G	G	G	T	T	S													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	.	.	.	.	.	.	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y
Query Conservation																																		.	.	.	.	.	.
Alig confidence		.	.	.																														.	.	.	.	.	.																															.
Template Conservation		.	.	.																																																																		.
Template Sequence		.	.	.	C	A	S	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G	L	A	V	L	E	T	I	D	R	D	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D	G	L	S	E	L	A	K	R	H	P	L	I	G	D	I	R	G	R	G	L	.	A	C	G	M	E	L	V	C	D	R	Q
Template Known Secondary structure		.	.	.	S		S	S	S	S			T	T	T	T																		T	T																								T	T								T	T	.										T	T
Template Predicted Secondary structure		.	.	.																																																																		.
Template SS confidence
					287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	V	L	E	F	T	P	P	L	T	I	T	E	T	D	I	H	K	A	L	D	L	L	D	R	A
Template Known Secondary structure		T	T																		T							S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.																									.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		375
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		419

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions