Job Description P27833 Confidence 99.91% Date Thu Jan 5 11:44:10 GMT 2012 Rank 182 Aligned Residues 340 % Identity 12% Template c2zy3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase Resolution 2.50 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	.	.	.	.	.	.	.	.	.	.	.	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	D	.	.	.	.	I	Q	P	G	D	E	V	I
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		A	A	F	L	H	E	M	V	D	G	I	L	G	C	N	Y	P	V	P	P	R	M	L	N	I	S	E	K	I	V	R	Q	Y	I	I	R	E	M	G	A	D	A	I	P	S	E	S	V	N	L	F	A	V	E	G	G	T	A	A	M	A	Y	I	F	E	S	L	K	L	N	G	L	L	K	A	G	D	K	V	A
Template Known Secondary structure														T		S			S	S	T	T																	T	T		T	T	S		G	G	G							S																T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure														.	.																		.																		.	.	.										.	.	.																.
Query SS confidence														.	.																		.																		.	.	.										.	.	.																.
Query Sequence		M	P	S	Y	T	F	V	S	T	A	N	A	.	.	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	.	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	.	.	.	V	I	V	P	V	H	Y	A	G	.	.	.	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	.
Query Conservation														.	.																		.																		.	.	.										.	.	.																.
Alig confidence														.	.																		.																		.	.	.										.	.	.																.
Template Conservation
Template Sequence		I	G	M	P	V	F	T	P	Y	I	E	I	P	E	L	A	Q	Y	A	L	E	E	V	A	I	N	A	D	P	S	L	N	W	Q	Y	P	D	S	E	L	D	K	L	K	D	P	A	I	K	I	F	F	C	V	N	P	S	N	P	P	S	V	K	M	D	Q	R	S	L	E	R	V	R	N	I	V	A	E	H	R
Template Known Secondary structure					S			T					S	T	T	S	T	T	T										B	G	G	G	T	S	B							G	G	G	G		T	T								S	S		S	S	S		B																	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
			146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.																																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	.	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	L	M	I	L	T	D	D	V	Y	G	T	F	A	D	D	F	Q	S	L	F	A	I	C	P	E	N	T	L	L	V	Y	S	F	S	K	Y	F	G	A	T	G	W	R	L	G	V	V	A	A	H	Q	Q	N	V	F	D	L	A	L	D	K	L	Q	E	S	E	K	V	A	L	D	H	R	Y	R	S	L	L
Template Known Secondary structure		T	T								T	T	G	G	G	S	S	S									G	G	G							S	T	T	T	T	T		G	G	G									S	S									S	S												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
			208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C
Query Conservation		.
Alig confidence		.																																																																													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		P	D	V	R	S	L	K	F	I	D	R	L	V	A	D	S	R	A	V	A	L	N	H	T	A	G	L	S	T	P	Q	Q	V	Q	M	A	L	F	S	L	F	A	L	M	D	E	A	D	E	Y	K	H	T	L	K	Q	L	I	R	R	R	E	T	T	L	Y	R	E	L	G	M	P	P	L	R	D	E	.	.	.
Template Known Secondary structure		S		G	G	G											T	T	T	T	T	T	G	G	G		S	S																			T	T																			T	T	T	T	T	S						T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.																		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	N	A	H	M	F	Y	I	K	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	V	D	Y	Y	T	L	I	D	L	Q	D	V	T	A	K	L	Y	G	E	A	F	S	E	W	A	V	K	Q	S	S	T	G	D	M	L	F	R	I	A	D	E	T	G	I	V	L	L	P	G	R	G	F	G	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P
Template Known Secondary structure		T	B			S																																								S								S	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.																						.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		S	G	R	A	S	L	.	A	N	L	N	E	Y	E	Y	A	A	I	G	R	A	L	R	K	M	A
Template Known Secondary structure							S	.	S	S	S
Template Predicted Secondary structure								.
Template SS confidence
		495	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions