Job Description P27833 Confidence 99.95% Date Thu Jan 5 11:44:10 GMT 2012 Rank 104 Aligned Residues 333 % Identity 18% Template c2zc0C_ PDB info PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase Resolution 2.30 Å

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		1	.	.	.			.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure						.	.						.	.	.	.																	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence						.	.						.	.	.	.																	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		M	I	P	F	.	.	N	A	P	P	V	.	.	.	.	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	.	.	.	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	.	.	.	.	.	.	.	.	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A
Query Conservation						.	.						.	.	.	.																	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence						.	.						.	.	.	.																	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	S	L	A	A	G	D	P	D	P	E	L	I	P	R	A	V	L	G	E	I	A	K	E	V	L	E	K	E	P	K	S	V	M	Y	T	P	A	N	G	I	P	E	L	R	E	E	L	A	A	F	L	K	K	Y	D	H	L	E	V	S	P	E	N	I	V	I	T	I	G	G	T	G	A	L	D	L	L	G
Template Known Secondary structure					S							T	T	T	S																	G	G	G	G	S				T	T																	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130				.	.
Predicted Secondary structure																																															.	.	.	.	.															.	.	.									.	.	.
Query SS confidence																																															.	.	.	.	.															.	.	.									.	.	.
Query Sequence		L	L	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	.	.	.	.	.	E	T	L	I	E	A	A	I	T	D	K	T	R	V	.	.	.	I	V	P	V	H	Y	A	G	.	.	.	V	A
Query Conservation																																															.	.	.	.	.															.	.	.									.	.	.
Alig confidence					.																																										.	.	.	.	.															.	.	.									.	.	.
Template Conservation					.
Template Sequence		R	V	L	.	I	D	P	G	D	V	V	I	T	E	N	P	S	Y	I	N	T	L	L	A	F	E	Q	L	G	A	K	I	E	G	V	P	V	D	N	D	G	M	R	V	D	L	L	E	E	K	I	K	E	L	K	A	K	G	Q	K	V	K	L	I	Y	T	I	P	T	G	Q	N	P	M	G	V	T	M	S	M
Template Known Secondary structure					.			T	T								S											T	T	T										T	T																	T	T											S	S		T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		116	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	.	.	.	.	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.
Template Conservation
Template Sequence		E	R	R	K	A	L	L	E	I	A	S	K	Y	D	L	L	I	I	E	D	T	A	Y	N	F	M	R	Y	E	G	G	D	I	V	P	L	K	A	L	D	N	E	G	R	V	I	V	A	G	T	L	S	K	V	L	G	T	G	F	R	I	G	W	I	I	A	E	G	E	I	L	K	K	V	L	M	Q	K	Q	P
Template Known Secondary structure															T								T	T	T	T		B	S	S		S	S				G	G	G	G		S	S									S						S	S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	C	A	P	A	I	S	Q	Y	I	A	L	E	Y	L	K	R	G	Y	F	E	K	Y	H	L	E	G	A	L	L	G	Y	K	E	K	R	D	I	M	L	K	A	L	E	N	H	L	P	N	A	E	F	T	K	P	I
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S	S														T	T						T	T	T	T																					S	S	S						S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275																							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A	L	I	N	F	L	.	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V
Query Conservation																								.
Alig confidence																								.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		A	G	M	F	V	M	F	F	L	P	E	G	A	D	G	I	S	F	A	N	E	L	M	E	R	E	G	V	V	V	V	P	G	K	P	F	Y	T	D	E	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	A	I	R	L	N	F	S	.	R	P	S	K	E	E	I	P	I	G
Template Known Secondary structure		B	S	S							S	T	T													T	T					B			G	G	G		S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	.	S	S		T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.																			.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.
		368	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	L	L	N	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	K	L	A	K	L	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions