Job Description P27833 Confidence 100.00% Date Thu Jan 5 11:44:10 GMT 2012 Rank 2 Aligned Residues 366 % Identity 19% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.
Query Sequence		I	P	F	N	A	P	P	V	V	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L	.	.	.	.	.	.	D	I	Q	P	G	D	E	V	I
Query Conservation																																																																			.	.	.	.	.	.
Alig confidence																												.																																							.	.	.	.	.	.
Template Conservation																												.
Template Sequence		Y	P	L	A	S	S	T	W	D	D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	M	F	T	.	M	G	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	G	S	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K	P	R	L	K	K	G	D	E	I	I
Template Known Secondary structure		B		S																				T			B	.	S																T		S						S													T	T	S	S	S	S		S			T	T
Template Predicted Secondary structure																												.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	A	V	S	W	S	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	D	I	N	T	L	N	I	D	I	E	S	L	K	E	A	V	T	D	S	T	K	A	I	L	T	V	N	L	L	G	N	P	N	N	F	D	E	I	N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E
Template Known Secondary structure				S		S											T	T								B		T	T	T		S	B											S	S									B	T	T	B												T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210											.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	.	.	.	.	.	.	.	.	.	.	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		S	M	G	A	T	F	N	N	K	C	A	G	T	F	G	L	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	.	E	G	G	C	I	V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N	K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K
Template Known Secondary structure			T	T				T	T			T	T	S	S	S	S								T	T	S	S	S		S	S	.	S							S												T	B	T	T	B	S	T	T	S		S	B		S	S	S	S	B			S						T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	R	S	A
Query Conservation
Alig confidence																																																			.	.	.
Template Conservation																																																			.	.	.
Template Sequence		F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K	D	H	P	Y	L	.	.	.	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S	F	I	I	K	K	D	S	G	V	I	R	K	Q
Template Known Secondary structure		B		S				B				B																																	T	T		S	S		.	.	.							S	B												T	T	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	.	.	.	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		L	V	E	N	L	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E	V	L	K
Template Known Secondary structure									T	T	B			B		S	T	T	S		G	G	G						T	T							S																			S	S													T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions