Job Description P27833 Confidence 99.95% Date Thu Jan 5 11:44:10 GMT 2012 Rank 105 Aligned Residues 334 % Identity 12% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure													.	.															.												.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence													.	.															.												.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		F	N	A	P	P	V	V	G	T	E	L	.	.	D	Y	M	Q	S	A	M	G	S	G	K	L	C	G	.	D	G	G	F	T	R	R	C	Q	Q	W	.	.	.	.	L	E	Q	R	F	G	S	A	.	.	.	.	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	.	.	.	.	.	.	.
Query Conservation													.	.															.												.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Alig confidence													.	.															.												.	.	.	.									.	.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P
Template Known Secondary structure		S	S	S																					S	S		T	T	T																				T		G	G	G		S						S	S																		T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
								66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	.	.	.	K	I	V	F	V	D	V	R	P	D	T	M	N	I	D	E	T	L	I	E	A	A	I	T	D	K	.	.	.	.	.	.	.	.	.	T	R	V	I	V	P	V	H
Query Conservation		.	.	.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																													.	.	.											.																.	.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	.	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T
Template Known Secondary structure		T						G	G	G	S									T	T	S		T									T	T	S		G	G	G						B		T	T	.	S		B															T	T										B	S		T
Template Predicted Secondary structure																																																	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		Y	A	G	V	A	C	E	M	D	T	I	M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	T	Y	K	G	R	A	L	G	T	I	G	H	I	.	.	.	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.												.
Template Conservation																																																													.
Template Sequence		V	Y	G	A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M	G	.	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N
Template Known Secondary structure		T	T			B														T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S											.		S	S								S	S	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	R	E	K	G	T	N	R	S	Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Sequence		Q	M	H	D	L	S	Y	D	T	G	.	.	.	.	.	.	.	.	.	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	.	.	.	.	.
Template Known Secondary structure						G	G	G			G	.	.	.	.	.	.	.	.	.	G	G	S	S		S	S																																								T	S	T	T				S	S	S	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.										430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.													.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	V	Q	N	A	H	M	F	Y	I	K	L	R	D	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	R	S	A	L	I	N	F	L	K	E	A	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	D	K	V	N	F	F	R
Template Known Secondary structure		S			S	S	S									T	T	T	T	T									T	T													T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.																						.	.	.	550	.	.	.	.	.
		353	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	P	L	.	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L	L	N	Y
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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