Job Description P27833 Confidence 99.95% Date Thu Jan 5 11:44:10 GMT 2012 Rank 124 Aligned Residues 328 % Identity 18% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		1	.	.	.			.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure						.	.							.	.																	.																				.	.	.	.	.	.	.	.	.
Query SS confidence						.	.							.	.																	.																				.	.	.	.	.	.	.	.	.
Query Sequence		M	I	P	F	.	.	N	A	P	P	V	V	.	.	G	T	E	L	D	Y	M	Q	S	A	M	G	S	G	K	L	.	C	G	D	G	G	F	T	R	R	C	Q	Q	W	L	E	Q	R	F	G	.	.	.	.	.	.	.	.	.	S	A	K	V	L	L	T	P	S	C	T	A	S	L	E	M	A	A	L	L	L
Query Conservation						.	.							.	.																	.																				.	.	.	.	.	.	.	.	.
Alig confidence						.	.							.	.																	.																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	N	L	G	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L
Template Known Secondary structure					S	S		S	S		S	S																T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																										.	.	.	.	.	.
Query SS confidence																																									.	.																										.	.	.	.	.	.
Query Sequence		D	I	Q	P	G	D	E	V	I	M	P	S	Y	T	F	V	S	T	A	N	A	F	V	L	R	G	A	K	I	V	F	V	D	V	R	P	D	T	M	.	.	N	I	D	E	T	L	I	E	A	A	I	T	D	K	T	R	V	I	V	P	V	H	Y	A	G	.	.	.	.	.	.	V	A	C	E	M	D	T	I
Query Conservation																																									.	.																										.	.	.	.	.	.
Alig confidence		.																																							.	.																										.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A	V	T	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L	A	A	I
Template Known Secondary structure		.			T	T								S			T	T								T	T												T	T															T	T								S	S		T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		M	A	L	A	K	K	H	N	L	F	V	V	E	D	A	A	Q	G	V	M	S	.	.	.	.	T	Y	K	G	R	A	L	G	T	I	G	H	I	G	C	F	S	F	H	E	T	K	N	Y	T	A	G	G	E	G	G	A	T	L	I	N	D	K	A	L	I	E	R	A	E	I	I	R	E	K	G	T	N	R	S
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																																.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S		T	T	T																			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	F	R	G	Q	V	D	K	Y	T	W	R	D	I	G	S	S	Y	L	M	S	D	L	Q	A	A	Y	L	W	A	Q	L	E	A	A	D	R	I	N	Q	Q	R	L	A	L	W	Q	N	Y	Y	D	A	L	A	P	L	A	K	A	G	R	I	E	L	P	S	I	P	D	G	C	V	Q	N	A	H	M	F	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	Q	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	.	.	.	.	.	.	.	.	.	G	F	A	V	H	D	S	Y	G	T	Y	F	L	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.					T	S				T	T																																						.	.	.	.	.	.	.	.	.	T								B	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
											258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.
		295	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure						.	.																.
Query SS confidence						.	.																.
Query Sequence		I	K	L	R	.	.	D	I	D	D	R	S	A	L	I	N	F	L	K	E	A	.	E	I	M	A	V	F	H	Y	I	P	L	H	G	C	P	A	G	E	H	F	G	E	F	H	G	E	D	R	Y	T	T	K	E	S	E	R	L	L	R	L	P	L	F	Y	N	L	S	P	V	N	Q	R	T	V	I	A	T	L
Query Conservation						.	.																.
Alig confidence						.	.																.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	.	.	K	R	D	D	T	L	D	E	A	I	R	R	L
Template Known Secondary structure					G	G	G	T																S						G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S						G	G	G								.	.	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380
		372	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	L
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		389	390	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions