Job Description P77316 Confidence 100.00% Date Thu Jan 5 12:27:40 GMT 2012 Rank 29 Aligned Residues 337 % Identity 18% Template c2vwpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glucose dehydrogenase; PDBTitle: haloferax mediterranei glucose dehydrogenase in complex2 with nadph and zn. Resolution 2.01 Å

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		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure									.																																														.	.	.
Query SS confidence									.																																														.	.	.
Query Sequence		M	K	A	L	T	Y	H	.	G	P	H	H	V	Q	V	E	N	V	P	D	P	G	V	E	Q	A	D	D	I	I	L	R	I	T	A	T	A	I	C	G	S	D	L	H	L	Y	R	G	K	I	P	Q	V	.	.	.	K	H	G	D	I	F	G	H	E	F	M	G	E	V	V	E	T	G	K	D	V	K	N	L
Query Conservation									.																																														.	.	.
Alig confidence									.															.																															.	.	.																			.	.
Template Conservation																								.																																																				.	.
Template Sequence		M	K	A	I	A	V	K	R	G	E	D	R	P	V	V	I	E	K	P	R	P	E	.	P	E	S	G	E	A	L	V	R	T	L	R	V	G	V	D	G	T	D	H	E	V	I	A	G	G	H	G	G	F	P	E	G	E	D	H	L	V	L	G	H	E	A	V	G	V	V	V	D	P	N	.	.	D	T	E	L
Template Known Secondary structure									T	T			S											.			T	T																					T		T	T	S	S		T	T		S																T	.	.	T	S	S
Template Predicted Secondary structure																								.																																																				.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	G	D	R	V	V	I	P	F	V	I	A	C	G	D	C	F	F	C	R	L	Q	Q	Y	A	A	C	E	N	T	N	A	G	K	G	A	A	L	N	K	K	Q	I	P	A	P	A	A	L	F	G	Y	S	H	L	Y	G	G	V	P	G	G	Q	A	E	Y	V	R	V	P	K	G	N	V	G	P	F	K	V
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		E	E	G	D	I	V	V	P	T	V	R	R	P	P	A	S	G	T	N	E	Y	F	E	R	D	Q	P	D	M	A	P	D	G	M	Y	F	E	R	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	H	G	Y	M	S	E	F	F	T	S	P	E	K	Y	L	.	.	V	R	I
Template Known Secondary structure			T	T							S					T	T								T	T		G	G	G			T	T	S					T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		B	S						G	G	G		.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																																								.	.	.	.	.
Query SS confidence																									.	.	.	.																																								.	.	.	.	.
Query Sequence		P	P	L	L	S	D	D	K	A	L	F	L	S	D	I	L	P	T	A	W	Q	A	A	.	.	.	.	K	N	A	Q	I	Q	Q	G	S	S	V	A	V	Y	G	A	G	P	V	G	L	L	T	I	A	C	A	R	L	L	G	A	E	Q	I	F	V	V	D	.	.	.	.	.	H	H	P	Y	R	L	H	F	A
Query Conservation																									.	.	.	.																																								.	.	.	.	.
Alig confidence																									.	.	.	.																																								.	.	.	.	.
Template Conservation
Template Sequence		P	R	S	Q	A	E	L	G	F	L	I	E	P	I	S	I	T	E	K	A	L	E	H	A	Y	A	S	R	S	A	F	D	W	D	P	S	S	A	F	V	L	G	N	G	S	L	G	L	L	T	L	A	M	L	K	V	D	D	K	G	Y	E	N	L	Y	C	L	G	R	R	D	R	P	D	P	T	I	D	I	I
Template Known Secondary structure			G	G	G	S	T	T	G	G	G																		T	T	T	S													S														T	T			S										S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	R	Y	G	A	I	P	I	N	F	D	E	D	S	D	P	A	Q	S	I	I	E	Q	T	A	G	H	R	G	V	D	A	V	I	D	A	V	G	F	E	A	K	G	S	T	T	E	T	V	L	T	N	L	K	L	E	G	S	S	G	K	A	L	R	Q	C	I	A	A	V	R	R	G	G	I	V	S	V	P
Query Conservation
Alig confidence																							.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	D	A	T	Y	V	D	S	R	Q	T	P	V	E	D	V	P	D	V	.	.	.	.	.	.	Y	E	Q	M	D	F	I	Y	E	A	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	K	H	A	I	Q	S	V	Q	A	L	A	P	N	G	V	G	A	L	L
Template Known Secondary structure				T	T						T	T	T	S		G	G	G					.	.	.	.	.	.	T										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.																					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		308	.	310	.	.	.	.	.	.	.	.	.					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure														.	.	.	.																						.
Query SS confidence														.	.	.	.																						.
Query Sequence		G	V	Y	A	G	F	I	H	G	F	L	F	.	.	.	.	G	D	A	F	D	K	G	L	S	F	K	M	G	Q	T	H	V	H	A	W	L	.	G	E	L	L	P	L	I	E	K	G	L	L	K	P	E	E	I	V	T	H	Y	M	P	F	E	E	A	A	R	G	Y	E	I	F	E	K	R	E	E	E	C	R
Query Conservation														.	.	.	.																						.
Alig confidence														.	.	.	.																						.																																	.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		G	V	P	S	D	W	A	F	E	V	D	A	G	A	F	H	R	E	M	V	L	H	N	K	A	L	V	G	S	V	N	S	H	V	E	H	F	E	A	A	T	V	T	F	T	K	L	P	K	W	F	L	E	D	L	V	T	G	V	H	P	L	S	E	F	E	A	A	F	D	.	.	.	.	D	D	D	T	T	I
Template Known Secondary structure																							T	T																								S															G	G	G	G	G	G	G	G		.	.	.	.		S	T	T
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.
		383	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	I	L	V	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	A	I	E	F	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions