Phyre 2 alignment of P77316 with c2j3iB

Job Description P77316
Confidence 100.00% Date Thu Jan 5 12:27:40 GMT 2012

Rank 47 Aligned Residues 317

% Identity 15% Template c2j3iB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent oxidoreductase p1; PDBTitle: crystal structure of arabidopsis thaliana double bond2 reductase (at5g16970)-binary complex

Resolution 2.8 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.								.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60			.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.															.	.																														.	.	.										.	.
Query SS confidence									.	.	.	.	.	.	.															.	.																														.	.	.										.	.
Query Sequence	M	K	A	L	T	Y	H	G	.	.	.	.	.	.	.	P	H	H	V	Q	V	E	N	V	P	D	P	G	V	.	.	E	Q	A	D	D	I	I	L	R	I	T	A	T	A	I	C	G	S	D	L	H	L	Y	R	G	K	I	P	Q	.	.	.	V	K	H	G	D	I	F	G	H	.	.	E	F	M	G	E	V
Query Conservation									.	.	.	.	.	.	.															.	.																														.	.	.										.	.
Alig confidence									.	.	.	.	.	.	.															.	.																														.	.	.										.	.
Template Conservation
Template Sequence	N	K	Q	V	I	L	K	D	Y	V	S	G	F	P	T	E	S	D	F	D	F	T	T	T	T	V	E	L	R	V	P	E	G	T	N	S	V	L	V	K	N	L	Y	L	S	C	D	P	Y	M	R	I	R	M	G	K	P	D	P	S	T	A	A	L	A	Q	A	Y	T	P	G	Q	P	I	Q	G	Y	G	V	S
Template Known Secondary structure			B				S	S		B	S	S	S			G	G	G											S				S	S	S													G	G	G	G	T	T	T	B				T	T	T	T			.					T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	1005	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.

	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	E	T	G	K	D	V	K	N	L	Q	K	G	D	R	V	V	I	P	F	V	I	A	C	G	D	C	F	F	C	R	L	Q	Q	Y	A	A	C	E	N	T	N	A	G	K	G	A	A	L	N	K	K	Q	I	P	A	P	A	A	L	F	G	Y	S	H	L	Y	G	G	V	P	G	G	Q	A	E	Y	V	R	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	I	I	E	S	G	H	P	D	Y	K	K	G	D	L	L	W	G	I	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	E	E	Y	S	V	I	T	P	M
Template Known Secondary structure							S	T	T			T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1085	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.																																																		.	.	.	.	1110	.	.	.	.	.

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	K	G	N	V	G	P	F	K	V	P	P	L	L	S	D	D	K	A	L	F	L	S	D	I	L	P	T	A	W	Q	A	A	K	N	A	Q	I	Q	Q	G	S	S	V	A	V	Y	G	A	G	P	V	G	L	L	T	I	A	C	A	R	L	L	G	A	E	Q	I	F	V	V	D	H	H	P	Y	R	L	H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	H	A	H	F	K	I	Q	H	T	D	V	P	L	S	Y	Y	T	G	L	L	G	M	P	G	M	T	A	Y	A	G	F	Y	E	V	C	S	P	K	E	G	E	T	V	Y	V	S	A	A	S	G	A	V	G	Q	L	V	G	Q	L	A	K	M	M	G	C	Y	V	V	G	S	A	G	S	K	E	K	V	D	L
Template Known Secondary structure	T	T	T								S	S		G	G	G	G	G	T	T	T	S												T	T	S				T	T						S	S		S	S	T	T										T	T	T								S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	1116	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	D	R	Y	G	A	I	P	I	N	F	D	E	D	S	D	P	A	Q	S	I	I	E	Q	T	A	G	H	R	G	V	D	A	V	I	D	A	V	G	F	E	A	K	G	S	T	T	E	T	V	L	T	N	L	K	L	E	G	S	S	G	K	A	L	R	Q	C	I	A	A	V	R	R	G	G	I	V	S	V
Query Conservation
Alig confidence																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	K	T	K	F	G	F	D	D	A	F	N	Y	K	E	E	S	D	L	T	A	A	L	K	R	C	F	.	P	N	G	I	D	I	Y	F	E	N	V	G	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	D	A	V	L	V	N	M	N	M	H	G	R	I	A	V
Template Known Secondary structure			T	T	T			S					T	T	T		S	S										.	T	T		B	S					S	S		T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									B		T	T
Template Predicted Secondary structure																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.		.	.	.	.	.	.	.	1230	.	.	.	.	.	.																						.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.

	307	.	.						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.																												.	.	.	.	.
Query SS confidence				.	.	.	.	.																												.	.	.	.	.
Query Sequence	P	G	V	.	.	.	.	.	Y	A	G	F	I	H	G	F	L	F	G	D	A	F	D	K	G	L	S	F	K	M	G	Q	T	H	V	.	.	.	.	.	H	A	W	L	G	E	L	L	P	L	I	E	K	G	L	L	K	P	E	E	I	V	T	H	Y	M	P	F	E	E	A	A	R	G	Y	E	I	F	E	K
Query Conservation				.	.	.	.	.																												.	.	.	.	.
Alig confidence				.	.	.	.	.																												.	.	.	.	.																			.	.
Template Conservation																																																											.	.
Template Sequence	C	G	M	I	S	Q	Y	N	L	E	N	Q	E	G	V	H	N	L	S	N	I	I	Y	K	R	N	R	I	Q	G	F	V	V	S	D	F	Y	D	K	Y	S	K	F	L	E	F	V	L	P	H	I	R	E	G	K	I	T	Y	.	.	V	E	D	V	A	D	G	L	E	K	A	P	E	A	L	V	G	L	F	H
Template Known Secondary structure				T	T	G	G	G		S	S							G	G	G	G	G	T	S									G	G	G	G	T	T	T	T												T	T	T	S				.	.						B	S	G	G	G								T	T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
	1254	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.			.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.

	377	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E	E	E	C	R	K	V	I	L	V	P	G	A	Q
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence	G	K	N	V	.	G	K	Q	V	V	V	V	A	R	E
Template Known Secondary structure	T			S	.	S						S	S
Template Predicted Secondary structure					.
Template SS confidence
	1332	.	.	.		.	.	.	.	1340	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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