Job Description P77316 Confidence 100.00% Date Thu Jan 5 12:27:40 GMT 2012 Rank 46 Aligned Residues 312 % Identity 19% Template c1y9eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																								.
Query SS confidence													.	.	.																																								.
Query Sequence		M	K	A	L	T	Y	H	G	P	H	H	.	.	.	V	Q	V	E	N	V	P	D	P	G	V	E	Q	A	D	D	I	I	L	R	I	T	A	T	A	I	C	G	S	D	L	H	L	Y	R	G	K	I	P	.	Q	V	K	H	G	D	I	F	G	H	E	F	M	G	E	V	V	E	T	G	K	D	V	K	N	L
Query Conservation													.	.	.																																								.
Alig confidence													.	.	.											.																													.																			.	.
Template Conservation																										.																																																.	.
Template Sequence		F	Q	A	L	Q	A	E	K	N	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	.	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	G	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	V	S	.	.	S	N	D	P	R	F
Template Known Secondary structure				B							T	T					B						G	G	G	.	S		S	S	S																			S	T	T		S				S	S						S								S	.	.		S		T	T
Template Predicted Secondary structure																										.																																																.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	G	D	R	V	V	I	P	F	V	I	A	C	G	D	C	F	F	C	R	L	Q	Q	Y	A	A	C	E	N	T	N	A	G	K	G	A	A	L	N	K	K	Q	I	P	A	P	A	A	L	F	G	Y	S	H	L	Y	G	G	V	P	G	G	Q	A	E	Y	V	R	V	P	K	G	N	V	G	P	F	K	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		A	E	G	D	E	V	I	A	T	S	Y	E	L	G	V	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	G	L	S	E	Y	A	S	V	P	G	D	W	L	.	.	V	P	L
Template Known Secondary structure			T	T							S	T	T	B	T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	B	S						G	G	G		.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																																												.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		P	P	L	L	S	D	D	K	A	L	F	L	S	D	I	L	P	T	A	W	Q	A	.	.	.	.	A	K	N	A	Q	I	Q	Q	G	S	S	V	A	V	Y	G	A	G	P	V	G	L	L	T	I	A	C	A	R	L	L	G	A	E	Q	I	F	V	V	D	H	H	P	Y	R	L	H	F	A	A	D	R	Y	G
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		P	Q	N	L	S	L	K	E	A	X	V	Y	G	T	A	G	F	T	A	A	L	S	V	H	R	L	E	Q	N	G	L	S	P	E	K	G	S	V	L	V	T	G	A	T	G	G	V	G	G	I	A	V	S	X	L	N	K	R	G	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A
Template Known Secondary structure			T	T																									T	T	T			T	T	S						S	S	T	T	S													T	T								S		T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	P	I	N	F	D	E	D	S	D	P	A	Q	S	I	I	E	Q	T	A	G	H	R	G	V	D	A	V	I	D	A	V	G	F	E	A	K	G	S	T	T	E	T	V	L	T	N	L	K	L	E	G	S	S	G	K	A	L	R	Q	C	I	A	A	V	R	R	G	G	I	V	S	V	P	G	V	Y	A	G
Query Conservation
Alig confidence														.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	V	I	S	R	E	D	V	Y	D	G	.	.	.	.	T	L	K	A	L	S	K	Q	Q	W	Q	G	A	V	D	P	V	G	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	A	S	L	L	S	K	I	Q	Y	G	G	S	V	A	V	S	G	L	T	G	G
Template Known Secondary structure		S									S	S	S	.	.	.	.				S	S						S					S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			T	T									T	T
Template Predicted Secondary structure														.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.							.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		F	I	H	G	F	L	F	G	D	A	F	D	K	G	L	S	F	K	M	G	Q	T	H	V	.	.	.	.	.	.	H	A	W	L	G	E	L	L	P	L	I	E	K	G	L	L	K	P	E	E	I	V	T	H	Y	M	P	F	E	E	A	A	R	G	Y	E	I	F	E	K	R	E	E	E	C	R	K	V	I	L
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																			.	.																									.
Template Conservation																																																		.	.																									.
Template Sequence		G	E	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	D	S	V	Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D	L	K	P	D	Q	L	L	T	.	.	I	V	D	R	E	V	S	L	E	E	T	P	G	A	L	K	D	I	L	Q	N	R	I	Q	.	G	R	V	I	V
Template Known Secondary structure		S						S															S	T	T													T	T	T	T	T			S		S	G	G	.	.	G							S	T	T								S	S	S	S			S	.	S
Template Predicted Secondary structure																																																		.	.																									.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.
		387	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		329	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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