Job Description P71243 Confidence 99.97% Date Thu Jan 5 12:12:38 GMT 2012 Rank 24 Aligned Residues 312 % Identity 18% Template c3rhzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		M	K	V	G	F	F	L	L	K	F	P	L	S	S	E	T	F	V	.	.	.	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S
Query Conservation																				.	.	.
Alig confidence																				.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	V	Y	I	T	N	I	N	G	Q	S	I	Q	S	T	A	Q	L	C	Q	N	T	V	T	D	V	A	V	S	L	G	Y	R	E	L	G	I	Y	C	Y	Q	I	H	T	D	S	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S		T	T																	T	T											G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																												.							.	.	.
Query SS confidence																																												.							.	.	.
Query Sequence		Q	T	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	.	D	V	F	I	A	H	.	.	.	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H	G	I
Query Conservation																																												.							.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	S	K	R	L	D	G	I	V	A	G	L	R	H	G	D	V	V	I	F	Q	T	P	T	W	N	T	T	E	F	D	E	K	L	M	N	K	L	K	L	Y	D	I	K	I	V	L	F	I	H	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T			T	T										S	S													T	T	S	S								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	S	R	E	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G	D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	P	R	P	V	K	A	P	A	T	P	L	E	I	I	S	V	A	R	L	T	E
Query Conservation
Alig confidence			.	.	.																																																												.	.	.	.
Template Conservation			.	.	.																																																												.	.	.	.
Template Sequence		V	.	.	.	P	L	M	N	F	Y	L	M	D	R	T	I	A	Y	Y	N	K	A	D	V	V	V	A	P	S	Q	K	M	I	D	K	L	R	D	F	G	M	N	V	S	K	T	V	V	Q	G	M	W	D	H	P	T	Q	A	P	M	F	P	A	.	.	.	.	L	K	R	E	I	H	F	P	G	N	P	E	R
Template Known Secondary structure		G	.	.	.	G	G			G	G	G									T	T		S					S											T	T				S							S													.	.	.	.									S		T	T	T
Template Predicted Secondary structure			.	.	.																																																												.	.	.	.
Template SS confidence
		103				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V	K	A	M	L	D	D	A	D	V	F	L	L	P	S	.	V	T	G	A	D	G
Query Conservation																																																																											.
Alig confidence									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	F	V	K	E	W	.	.	.	.	.	.	.	.	.	.	K	Y	D	I	P	L	K	V	Y	T	W	Q	N	V	E	.	.	.	.	.	.	.	.	.	.	.	L	P	Q	N	V	H	K	I	N	Y	R	P	D	E	Q	L	L	M	E	M	S	Q	G	G	F	G	L	V	W	M	D	D	K	D	K	E	Y
Template Known Secondary structure			G	G	G	G	G		.	.	.	.	.	.	.	.	.	.			S	S							S					.	.	.	.	.	.	.	.	.	.	.			T	T																	T	T	S	S								G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.											.	.	.	190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G	I	P	V	V	S	T	L	H	S	G	I	P	E	L	V	E	A	D	K	S	G	W	L	V	P	E	N	D	A	R	A	L	A	Q	R	L	A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V	K	R	A	R	E	K	V	E	H	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																											.	.													.	.	.																			.	.	.	.
Template Conservation																																											.	.													.	.	.
Template Sequence		Q	S	L	Y	C	S	Y	K	L	G	S	F	L	A	A	G	I	P	V	I	V	Q	E	G	I	A	N	Q	E	L	I	E	N	N	G	L	G	W	I	V	K	.	.	D	V	E	E	A	I	M	K	V	K	N	V	.	.	.	N	E	D	E	Y	I	E	L	V	K	N	V	R	S	F	N	P	I	L	R	K	G
Template Known Secondary structure			T	T	S												T							T	T		T	T							T	T						S	.	.	S												.	.	.																T					T	T
Template Predicted Secondary structure																																											.	.													.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	N	Q	Q	V	I	N	R	E	L	A	S	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	T	R	R	L	L	T	E	S	V	F	Q	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions