Job Description P71243 Confidence 99.98% Date Thu Jan 5 12:12:38 GMT 2012 Rank 22 Aligned Residues 353 % Identity 15% Template c3dzcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Resolution 2.35 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	K	.	V	G	F	F	L	L	K	F	P	L	S	S	E	T	F	V	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S	Q	T
Query Conservation				.
Alig confidence				.														.	.																																																														.
Template Conservation																		.	.																																																														.
Template Sequence		M	K	K	V	L	I	V	F	G	T	R	P	E	A	I	K	.	.	M	A	P	L	V	Q	Q	L	C	Q	D	N	R	F	V	A	K	V	C	V	T	G	Q	H	R	E	M	L	D	Q	V	L	E	L	F	S	I	T	P	D	F	D	L	N	I	M	E	P	G	Q	T	L	N	G	V	T	S	K	I	L	L	.
Template Known Secondary structure											S							.	.												T	T										S	S	S										T	T				S								T	T													.
Template Predicted Secondary structure																		.	.																																																														.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H	G	I	D	I	S	S	R	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	Q	Q	V	L	S	S	E	Q	P	D	V	V	L	V	H	G	D	T	A	T	T	F	A	A	S	L	A	.	A	Y	Y	Q	Q	I	P	V	G	H	V	E	A	G	L	R	T	G	N	I	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S						T	T	S										.			T	T	T							T						S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
																															78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																			.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G	D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	P	V	K	A	P	A	T
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	W	P	E	E	G	N	R	K	L	T	A	A	L	T	Q	Y	H	F	A	P	T	D	T	S	R	A	N	L	L	Q	E	N	Y	N	A	E	N	I	F	V	T	G	N	T	V	I	D	A	L	L	A	V	R	E	K	I	H	T	D	M	D	L	Q	A	T	L	E	S	Q	F	P	M	L	D	A	S	K	K
Template Known Secondary structure		S	S	T	T											T		S					S	S										T	T			G	G	G																																T		T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	I	I	S	V	A	R	L	T	E	K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V	K	A	M	L	D	D	A	D	V
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		L	I	L	V	T	G	H	R	R	E	S	F	G	G	G	F	E	R	I	C	Q	A	L	I	T	T	A	E	Q	H	P	E	C	Q	I	L	Y	.	P	V	H	L	N	P	N	V	R	E	P	V	N	K	L	L	K	G	V	S	N	I	V	L	I	E	P	Q	Q	Y	L	P	F	V	Y	L	M	D	R	A	H	I
Template Known Secondary structure								S		B				T	T																	T	T						.				B												T	T	T		T	T																				S
Template Predicted Secondary structure																																							.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	L	P	S	V	T	G	A	D	G	D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G	I	P	V	V	S	T	L	H	S	G	I	P	E	L	V	E	A	D	K	S	G	W	L	V	P	E	N	D	A	R	A	L	A	Q	R	L	A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V	K	R
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																																									.															.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																																									.															.
Template Sequence		I	L	.	.	.	.	.	.	.	.	.	.	.	T	D	S	G	G	I	Q	E	E	A	P	S	L	G	K	P	V	L	V	M	R	E	T	T	E	R	P	E	A	V	A	A	G	T	V	K	L	V	G	T	.	N	Q	Q	Q	I	C	D	A	L	S	L	L	L	T	.	D	P	Q	A	Y	Q	A	M	S	Q	A
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.		S		S	G	G	G	T	T	G	G	G	G	T								S	S		S								T	S					T	T	.															.										T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																																									.															.
Template SS confidence
		287	.												.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	K	V	E	H	D	F	N	Q	Q	V	I	N	R	E	L	A	S	L	L	Q	A
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		H	.	.	.	.	.	N	P	Y	G	D	G	K	A	C	Q	R	I	A	D	I	L	A	K
Template Known Secondary structure			.	.	.	.	.		T	T			S
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		354						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions