Job Description P71243 Confidence 100.00% Date Thu Jan 5 12:12:38 GMT 2012 Rank 2 Aligned Residues 368 % Identity 23% Template c3c4vB_ PDB info PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.											.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	V	G	F	F	L	L	K	F	P	.	.	.	.	.	.	.	.	.	.	L	S	S	E	T	F	V	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	A	M	I	S	M	H	T	S	P	L	Q	Q	P	G	T	G	D	S	G	G	M	N	V	Y	I	L	S	T	A	T	E	L	A	K	Q	G	I	E	V	D	I	Y	T	R	A	T	R	P	S	Q	G	E	I	V	R	V	A	E	N	L	R	V	I	N	I	A	A	G	P	Y	E	G	L	S	K	E	E
Template Known Secondary structure									T	T	S		T	T	S		T	T	B	T	T	B	S																T	T												G	G	G		S						T	T									S		S	S	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	H	R	A	S	Q	T	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Sequence		L	P	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	A	F	T	G	G	M	L	S	F	T	R	R	E	K	V	T	Y	D	L	I	H	S	H	Y	W	L	S	G	Q	V	G	W	L	L	R	D	L	W	R	I	.	P	L	I	H	T	A	H
Template Known Secondary structure		G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T				S																					T		.							S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template SS confidence
		81	.	.	.																											.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.											.
Predicted Secondary structure																																											.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		H	G	I	D	I	S	S	R	E	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G	D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	.	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	P	R	P	V	K	A	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																																											.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	A	A	V	S	D	T	P	E	S	E	A	R	R	I	C	E	Q	Q	L	V	D	N	A	D	V	L	A	V	N	T	Q	E	E	M	Q	D	L	M	H	H	Y	D	A	D	P	D	R	I	S	V	V	S	P	G	A	D	V	E	L	Y	S	P	G	N	D	R	A	T	E	R	S	R	R	E	L	G	I	P
Template Known Secondary structure		S		S																							S					S	S															G	G	G								B		T	T	T	S				S	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	P	L	E	I	I	S	V	A	R	L	T	E	K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V	K	A	M	L	D	D	A
Query Conservation
Alig confidence																																																.	.	.
Template Conservation																																																.	.	.
Template Sequence		L	H	T	K	V	V	A	F	V	G	R	L	Q	P	F	K	G	P	Q	V	L	I	K	A	V	A	A	L	F	D	R	D	P	D	R	N	L	R	V	I	I	C	G	G	P	Y	.	.	.	R	H	M	A	E	E	L	G	V	E	K	R	I	R	F	L	D	P	R	P	P	S	E	L	V	A	V	Y	R	A	A
Template Known Secondary structure		S	S	S							S			S	G	G	G																	T	T													.	.	.								T		G	G	G
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	L	L	P	S	V	T	G	A	D	G	D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G	I	P	V	V	S	T	L	H	S	G	I	P	E	L	V	E	A	D	K	S	G	W	L	V	P	E	N	D	A	R	A	L	A	Q	R	L	A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V
Query Conservation
Alig confidence											.	.	.	.	.	.																																																								.
Template Conservation											.	.	.	.	.	.																																																								.
Template Sequence		D	I	V	A	V	P	S	F	N	.	.	.	.	.	.	E	S	F	G	L	V	A	M	E	A	Q	A	S	G	T	P	V	I	A	A	R	V	G	G	L	P	I	A	V	A	E	G	E	T	G	L	L	V	D	G	H	S	P	H	A	W	A	D	A	L	A	T	L	L	D	.	D	D	E	T	R	I	R	M	G
Template Known Secondary structure		S							S	S	.	.	.	.	.	.		S	S										T	T							S		T	T					S		B	T	T	T					S	S															S	.
Template Predicted Secondary structure											.	.	.	.	.	.																																																								.
Template SS confidence
		307	.	.	310	.	.	.	.	.							.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	A	R	E	K	V	E	H	D	F	N	Q	Q	V	I	N	R	E	L	A	S	L	L	Q	A	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		E	D	A	V	E	H	A	.	R	T	F	S	W	A	A	T	A	A	Q	L	S	S	L	Y	N	D	A
Template Known Secondary structure									.		T		B
Template Predicted Secondary structure									.
Template SS confidence
		380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions