Job Description P71243 Confidence 99.94% Date Thu Jan 5 12:12:38 GMT 2012 Rank 27 Aligned Residues 310 % Identity 11% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	V	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S	Q	T	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K
Query Conservation
Alig confidence												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	F	L	P	I	L	K	E	L	.	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	E	Y	L	K	T	K	S	D	F
Template Known Secondary structure												.	T	T	T	S							S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	G	G	G
Template Predicted Secondary structure												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.																																													.	.	.	60	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H	G	I	D	I	S	S	R	E	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G
Query Conservation
Alig confidence																																											.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	C	L	H	P	L	P	L	D	N	P	F	S	V	K	R	F	E	E	L	S	K	P	K	A	L	I	V	V	E	R	E	F	W	P	S	L	I	I	F	.	.	.	.	.	T	K	V	P	K	I	L	V	N	.	.	.	.	.	.	.	.	.	A	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F
Template Known Secondary structure			S								S	S														S						S											.	.	.	.	.			S							.	.	.	.	.	.	.	.	.													G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.										.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	P	R	P	V	K	A	P	A	T	P	L	E	I	I	S	V	A	R	L	T	E	K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R
Query Conservation
Alig confidence																						.	.								.	.	.	.	.
Template Conservation																						.	.								.	.	.	.	.
Template Sequence		D	L	I	I	M	R	T	Q	E	D	V	E	K	F	K	T	F	G	A	K	.	.	R	V	F	S	C	G	N	.	.	.	.	.	L	K	F	I	C	Q	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	G	E	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K
Template Known Secondary structure		S					S	S									T	T	T		S	.	.	S							.	.	.	.	.	G	G	G											S	S										G	G	G													T	T		T	T
Template Predicted Secondary structure																						.	.								.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.								.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.
Query Sequence		Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	.	.	.	.	.	.	.	S	H	E	V	K	A	M	L	D	D	A	D	V	F	L	L	P	S	V	T	G	A	D	G	D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G
Query Conservation																																			.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		L	I	L	V	P	R	H	I	E	N	A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	.	.	.	.	.	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G
Template Known Secondary structure							S	S	G	G	G											T	T						T	T				S	S							T	T						G	G	G								.	.	.	.	.	S	S	S	S	T	T											T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		329	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure									.											.
Query SS confidence									.											.
Query Sequence		I	P	V	V	S	T	L	.	H	S	G	I	P	E	L	V	E	A	.	D	K	S	G	W	L	V	P	E	N	D	A	R	A	L	A	Q	R	L	A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V	K	R	A	R	E	K	V	E	H	D	F	N	Q	Q	V	I	N	R	E
Query Conservation									.											.
Alig confidence									.											.																									.				.
Template Conservation																																													.				.
Template Sequence		I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E	F	L	E	K	E	G	A	G	F	E	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	.	V	K	K	.	E	I	K	V	E	E	K	S	R	E	I	K	G	C	Y	L	E	K	L	R	E	F	L	R
Template Known Secondary structure								S			T	T	S										T	T							S														.	S			.
Template Predicted Secondary structure																																													.				.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions