Phyre 2 alignment of P71243 with c2p6pB

Job Description P71243
Confidence 99.90% Date Thu Jan 5 12:12:38 GMT 2012

Rank 33 Aligned Residues 358

% Identity 11% Template c2p6pB_

PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2

Resolution 1.88 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence	M	K	V	G	F	F	L	L	K	F	P	L	S	S	E	T	.	F	V	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S	Q	T
Query Conservation																	.
Alig confidence								.	.								.
Template Conservation								.	.
Template Sequence	M	R	I	L	F	V	A	.	.	A	G	S	P	A	T	V	F	A	L	A	P	L	A	T	A	A	R	N	A	G	H	Q	V	V	M	A	A	N	Q	D	M	G	P	V	V	T	G	V	G	L	P	A	V	A	T	T	D	L	P	I	R	H	F	I	T	T	D	R	E	G	R	P	E	A	I	P	S	D	P	V
Template Known Secondary structure								.	.		S	S																	T	T									G	G	G						T	T	T						S		S	S		G	G	G	G	S		B		T	T	S		B					S	S
Template Predicted Secondary structure								.	.
Template SS confidence
	1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H	G	I	D	I	S	S	R	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Sequence	A	Q	A	R	F	T	G	R	W	F	A	R	.	.	.	.	.	.	.	.	.	.	M	A	A	S	S	L	P	R	M	L	D	F	S	R	A	W	R	P	D	L	I	V	G	G	T	M	S	Y	V	A	P	L	L	A	L	H	L	.	.	.	.	G	V	P	H	A	R	Q	T	W	D	A	V	D	A	D	G	I
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.																			S						T	T		T										.	.	.	.	T								S	S	S				T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	.	.	.	.	.	.	.	G	D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	P	R	P	V	K	A	P	A	T	P	L	E	I	I	S	V	A	R	L	T
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence	H	P	G	A	D	A	E	L	R	P	E	L	S	E	L	G	L	E	R	L	P	A	P	D	L	F	I	D	I	C	P	P	S	L	R	.	.	.	.	P	A	N	A	A	P	A	R	M	M	R	H	V	A	T	S	R	Q	C	P	L	E	P	W	M	Y	T	R	D	T	R	Q	R	V	L	V	T	S	G	D	R
Template Known Secondary structure								T							T	T		S	S					S						S		G	G	G	S	.	.	.	.		S	S																				G	G	G	G				S	S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V	K	A	M	L	D	D	A	D	V	F	L	L	P	S	V	T	G	A	D	G
Query Conservation
Alig confidence															.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence	N	F	D	F	L	R	G	L	A	K	D	L	V	R	.	.	.	.	.	W	D	V	E	L	I	V	A	A	P	D	T	V	A	E	A	L	R	A	E	V	P	Q	A	.	.	.	.	.	.	.	.	.	.	R	V	G	W	T	P	L	D	V	V	A	P	T	C	D	L	L	V	H	.	.	.	.	.	.	.	.
Template Known Secondary structure															.	.	.	.	.	T	T																				T	T	S	.	.	.	.	.	.	.	.	.	.			S								G	G	G		S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
	229	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.											.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																			.	.
Query SS confidence																											.	.	.	.																			.	.
Query Sequence	D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G	I	P	V	V	S	T	L	H	S	G	.	.	.	.	I	P	E	L	V	E	A	D	K	S	G	W	L	V	P	E	N	D	.	.	A	R	A	L	A	Q	R	L	A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V	K	R	A	R	E	K	V
Query Conservation																											.	.	.	.																			.	.
Alig confidence	.	.																									.	.	.	.																			.	.														.
Template Conservation	.	.																																																														.
Template Sequence	.	.	H	A	G	G	V	S	T	L	T	G	L	S	A	G	V	P	Q	L	L	I	P	K	G	S	V	L	E	A	P	A	R	R	V	A	D	Y	G	A	A	I	A	L	L	P	G	E	D	S	T	E	A	I	A	D	S	C	Q	E	L	Q	A	.	K	D	T	Y	A	R	R	A	Q	D	L	S	R	E	I	S
Template Known Secondary structure	.	.			S		S									T									S														T	S						T	T	T																.
Template Predicted Secondary structure	.	.																																																														.
Template SS confidence
			286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

	387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	H	D	F	N	Q	Q	V	I	N	R	E	L	A	S	L	L	Q	A
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence	G	M	.	P	L	P	A	T	V	V	T	A	L	E	Q	L	A	H	H
Template Known Secondary structure	T	S	.
Template Predicted Secondary structure			.
Template SS confidence
	363	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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