Job Description P71243 Confidence 96.12% Date Thu Jan 5 12:12:38 GMT 2012 Rank 56 Aligned Residues 260 % Identity 14% Template c2h1fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		M	K	V	G	F	F	L	L	K	F	P	L	S	S	E	T	F	V	L	N	Q	I	T	A	F	I	D	M	.	.	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S	Q
Query Conservation																														.	.
Alig confidence											.																			.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	V	L	I	V	K	T	S	.	S	M	G	D	V	L	H	T	L	P	A	L	T	D	A	Q	Q	A	I	P	G	I	K	F	D	W	V	V	E	E	G	F	A	Q	I	P	S	W	H	A	A	V	E	R	V	I	P	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	.							T	T											S	T	T									G	G	G	T	T	G	G	G	G	S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H	G	I	D	I	S	S	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	R	W	R	K	R	K	A	F	R	E	A	L	Q	A	K	N	Y	D	A	V	I	.	.	D	A	Q	G	L	V	K	S	A	A	L	V	T	R	L	A	H	G	V	K	H	G	M	D	W	Q	T	A	R	E	P	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T										T	S	S	B		S				.	.			S									T	G	G	G	S	B	S							T	T	T	S	S	S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
																								59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G	D	L	M	L	P	I	S	D	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	S	P	R	P	V	K	A	P	A	T	P	L	E	I	I	S	V	A	R	L	T	E	K	K	G	L	H
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		S	L	.	.	.	.	.	.	.	.	.	.	.	F	Y	N	R	K	H	H	I	A	K	Q	Q	H	A	V	E	R	T	R	E	L	.	.	.	F	A	K	S	L	G	Y	S	K	P	Q	T	Q	G	D	Y	A	I	A	Q	H	F	L	T	N	G	E	Y	A	V	F	L	H	A	T	T	R	D	D	K	H	W	P
Template Known Secondary structure		G	G	.	.	.	.	.	.	.	.	.	.	.	G		S							S	S	S										.	.	.						T	S				S	S							T					T												S	S	G	G	G	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		125	.												.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V	K	A	M	L	D	D	A	D	V	F	L	L	P	S	V	T	G	A	D	G	D	M	E	G	I	P
Query Conservation
Alig confidence																																				.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		E	E	H	W	R	E	L	I	G	L	L	A	D	S	G	I	R	I	K	L	P	W	G	A	P	H	E	E	E	R	A	K	R	L	.	.	A	E	G	F	A	Y	V	E	V	L	P	K	M	S	L	E	G	V	A	R	V	L	A	G	A	K	F	V	V	S	V	.	.	.	.	.	.	.	.	.	D	T	G	L
Template Known Secondary structure												T	G	G	G	T								S	S											.	.		T	T		T	T						S											T	T		S						.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																				.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260										.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	M	E	A	M	A	V	G	I	P	V	V	S
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		S	H	L	.	.	T	A	A	L	D	R	P	N	I	T
Template Known Secondary structure					.	.				T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		265	.	.			.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions