Return to main results Retrieve Phyre Job Id

Job DescriptionP71243
Confidence29.24%DateThu Jan 5 12:12:38 GMT 2012
Rank328Aligned Residues48
% Identity10%Templatec2dlnA_
PDB info PDB header:ligase(peptidoglycan synthesis)Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10........ .20.........30.........40........
Predicted Secondary structure 







...














Query SS confidence 

















. . .





























Query Sequence  MKVGFFLLKFPLSSETFV. . . LNQITAFIDMGFEVEILALQKGDTQNTHAA
Query Conservation 


  
    
   
  
...      
   
  
 
              
Alig confidence 

















...





























Template Conservation   

 
  

   
  
 
 
   
  

   
  
  

            
Template Sequence  DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM
Template Known Secondary structure  S


SSTTTT

TTTS
GGGSGGG
Template Predicted Secondary structure 











Template SS confidence 


















































   3......10.........20.........30.........40.........50...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions