Job Description P71243 Confidence 89.44% Date Thu Jan 5 12:12:38 GMT 2012 Rank 75 Aligned Residues 352 % Identity 15% Template c1y6gB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution Resolution 2.80 Å

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		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.										.
Query SS confidence									.										.
Query Sequence		M	K	V	G	F	F	L	.	L	K	F	P	L	S	S	E	T	.	F	V	L	N	Q	I	T	A	F	I	D	M	G	F	E	V	E	I	L	A	L	Q	K	G	D	T	Q	N	T	H	A	A	W	T	K	Y	N	L	A	A	R	T	R	W	L	Q	D	E	P	T	G	K	V	A	K	L	R	H	R	A	S	Q
Query Conservation									.										.
Alig confidence									.										.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	I	C	I	F	M	A	R	G	L	E	G	C	G	V	T	K	F	S	L	E	Q	R	D	W	F	I	K	N	G	H	E	V	T	L	V	Y	A	K	D	K	S	F	T	R	T	S	S	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T				S	S																T	T									T	T	S			T	T	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		T	L	R	G	I	H	R	K	N	T	W	Q	A	L	N	L	K	R	Y	G	A	E	S	R	N	L	I	L	S	A	I	C	G	Q	V	A	T	P	F	R	A	D	V	F	I	A	H	F	G	P	A	.	.	.	.	.	.	.	G	V	T	A	A	K	L	R	E	L	G	V	I	R	G	K	I	A	T	I	F	H
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	S	F	S	I	P	V	I	L	A	K	E	Y	D	K	A	L	K	L	V	N	D	C	D	I	L	I	I	N	S	V	P	A	T	S	V	Q	E	A	T	I	N	N	Y	K	K	L	L	D	N	I	K	P	S	I	R	V	V	V	Y	Q	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T																		T	S	S	S									B	T	T	S														S	S		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			1052	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																													.	.
Query SS confidence																																		.	.	.																													.	.
Query Sequence		G	I	D	I	S	S	R	E	V	L	N	H	Y	T	P	E	Y	Q	Q	L	F	R	R	G	D	L	M	L	P	I	S	D	.	.	.	L	W	A	G	R	L	Q	K	M	G	C	P	R	E	K	I	A	V	S	R	M	G	V	D	M	T	R	F	.	.	S	P	R	P	V	K	A	P	A	T	P	L	E	I	I
Query Conservation																																		.	.	.																													.	.
Alig confidence																		.	.	.	.													.	.	.																													.	.
Template Conservation																		.	.	.	.
Template Sequence		D	H	S	V	L	S	L	R	R	N	L	G	L	E	E	T	.	.	.	.	V	R	R	A	D	V	I	F	S	H	S	D	N	G	D	F	N	K	V	L	M	K	E	W	Y	P	E	A	P	T	V	Y	N	F	Q	P	P	M	D	I	V	K	V	R	S	T	Y	W	K	D	V	S	E	I	N	M	N	I	N	R
Template Known Secondary structure				S					T	T	B	S	S					.	.	.	.					S					S		T	T	S	T	T	T	T	T						S													B													G	G	G
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		1115	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130					.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.															.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	A	R	L	T	E	K	K	G	L	H	V	A	I	E	A	C	R	Q	L	K	E	Q	G	V	A	F	R	Y	R	I	L	G	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	E	R	R	L	R	T	L	I	E	Q	Y	Q	L	E	D	V	V	E	M	P	G	F	K	P	S	H	E	V
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	I	G	R	T	T	T	W	K	G	F	Y	Q	M	F	D	F	H	E	K	F	L	K	P	A	G	K	S	T	V	M	E	G	L	E	R	S	P	A	F	I	A	I	K	E	K	G	I	P	Y	E	Y	Y	G	N	R	E	I	D	K	M	N	L	A	P	N	Q	P	A	Q	I	L	D	C	Y	I	N	S	E	M
Template Known Secondary structure						S	S	G	G	G												T	T	G	G	G	T												T							T	T	T								T	T	S	G	G	G				S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		1201	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.
Query Sequence		K	A	M	L	D	D	A	D	V	F	L	L	P	S	V	T	G	A	D	G	D	M	E	G	I	P	V	A	L	M	E	A	M	A	V	G	I	P	V	V	S	T	L	H	S	G	.	.	.	.	.	.	.	.	I	P	E	L	V	E	A	D	K	S	G	W	L	V	P	E	N	D	A	R	A	L	A	Q	R	L
Query Conservation																																																.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	R	M	S	K	S	G	F	G	Y	Q	L	S	K	L	N	Q	K	Y	L	Q	R	S	L	E	Y	T	H	L	E	L	G	A	C	G	T	I	P	V	F	W	K	S	T	G	E	N	L	K	F	R	V	D	N	T	P	L	T	S	H	D	S	G	I	I	W	F	D	E	N	D	M	E	S	T	F	E	R	I
Template Known Secondary structure							T												G	G	G		S	S												T	T	S					B								B		S	S	S			B	S	S	S	S							B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		1281	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	F	S	Q	L	D	T	D	E	L	A	P	V	V	K	R	A	R	E	K	V	E	H	D	F	N	Q	Q	V	I	N	R	E	L	A	S	L	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		K	E	L	S	S	.	D	R	A	L	Y	D	R	E	R	E	K	A	Y	E	F	L	Y	Q	H	Q	D	S	S	F	C	F	K	E	Q	F	D	I	I
Template Known Secondary structure						S	.																					B
Template Predicted Secondary structure							.
Template SS confidence
		1361	.	.	.	.		.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.